2HCM - JenaLib

Title :   CRYSTAL STRUCTURE OF MOUSE PUTATIVE DUAL SPECIFICITY PHOSPHATASE COMPLEXED WITH ZINC TUNGSTATE, NEW YORK STRUCTURAL GENOMICS CONSORTIUM

Authors :   Y. Patskovsky, S. C. Almo, S. K. Burley, New York Sgx Research Cente Structural Genomics (Nysgxrc)

Date :   17 Jun 06 (Deposition) - 15 Aug 06 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym. Unit : A
Biol. Unit 1: A  (2x)
Biol. Unit 2: A  (1x)

Keywords :   Phosphatase, Structural Genomics, Psi, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. C. Almo, J. B. Bonanno, J. M. Sauder, S. Emtage, T. P. Dilorenzo, V. Malashkevich, S. R. Wasserman, S. Swaminathan, S. Eswaramoorthy, R. Agarwal, D. Kumaran, M. Madegowda, S. Ragumani, Y. Patskovsky, J. Alvarado, U. A. Ramagopal, J. Faber-Barata, M. R. Chance, A. Sali, A. Fiser, Z. Y. Zhang, D. S. Lawrence, S. K. Burley
Structural Genomics Of Protein Phosphatases.
J. Struct. Funct. Genom. V. 8 121 2007
PubMed-ID: 18058037 | Reference-DOI: 10.1007/S10969-007-9036-1

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 5)

Asymmetric Unit (4, 5)

No.	Name	Count	Type	Full Name
1	GOL	1	Ligand/Ion	GLYCEROL
2	NA	1	Ligand/Ion	SODIUM ION
3	WO4	1	Ligand/Ion	TUNGSTATE(VI)ION
4	ZN	2	Ligand/Ion	ZINC ION

Biological Unit 1 (2, 4)

No.	Name	Count	Type	Full Name
1	GOL	2	Ligand/Ion	GLYCEROL
2	NA	-1	Ligand/Ion	SODIUM ION
3	WO4	2	Ligand/Ion	TUNGSTATE(VI)ION
4	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (2, 2)

No.	Name	Count	Type	Full Name
1	GOL	1	Ligand/Ion	GLYCEROL
2	NA	-1	Ligand/Ion	SODIUM ION
3	WO4	1	Ligand/Ion	TUNGSTATE(VI)ION
4	ZN	-1	Ligand/Ion	ZINC ION

Sites (5, 5)

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ARG A:45 , GLN A:46 , GLN A:47 , LYS A:96 , ARG A:101 , ZN A:367 , ZN A:368 , HOH A:469 , HOH A:472	BINDING SITE FOR RESIDUE WO4 A 366
2	AC2	SOFTWARE	ARG A:45 , WO4 A:366 , ZN A:368 , HOH A:469	BINDING SITE FOR RESIDUE ZN A 367
3	AC4	SOFTWARE	WO4 A:366 , ZN A:367	BINDING SITE FOR RESIDUE ZN A 368
4	AC5	SOFTWARE	TRP A:139 , GLN A:143 , HOH A:443	BINDING SITE FOR RESIDUE NA A 370
5	AC6	SOFTWARE	PHE A:122 , LEU A:136 , TRP A:139 , HOH A:396 , HOH A:437 , HOH A:460	BINDING SITE FOR RESIDUE GOL A 369

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 2)

Asymmetric Unit (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	TYR_PHOSPHATASE_DUAL	PS50054	Dual specificity protein phosphatase family profile.	DUS28_MOUSE	10-150	1	A:10-150
2	TYR_PHOSPHATASE_2	PS50056	Tyrosine specific protein phosphatases family profile.	DUS28_MOUSE	68-130	1	A:68-130

Biological Unit 1 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	TYR_PHOSPHATASE_DUAL	PS50054	Dual specificity protein phosphatase family profile.	DUS28_MOUSE	10-150	2	A:10-150
2	TYR_PHOSPHATASE_2	PS50056	Tyrosine specific protein phosphatases family profile.	DUS28_MOUSE	68-130	2	A:68-130

Biological Unit 2 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	TYR_PHOSPHATASE_DUAL	PS50054	Dual specificity protein phosphatase family profile.	DUS28_MOUSE	10-150	1	A:10-150
2	TYR_PHOSPHATASE_2	PS50056	Tyrosine specific protein phosphatases family profile.	DUS28_MOUSE	68-130	1	A:68-130

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:159
 aligned with DUS28_MOUSE | Q8BTR5 from UniProtKB/Swiss-Prot  Length:163

    Alignment length:159
                             1                                                                                                                                                             
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149         
          DUS28_MOUSE     - -MGTSEAAPPPFARVAPALFIGNARAAGATELLVRAGITLCVNVSRQQPGPRAPGVAELRVPVFDDPAEDLLTHLEPTCAAMEAAVRDGGSCLVYCKNGRSRSAAVCTAYLMRHRGHSLDRAFQMVKSARPVAEPNLGFWAQLQKYEQTLQAQAILPRE 158
               SCOP domains d2hcma_ A: automated matches                                                                                                                                    SCOP domains
               CATH domains ----------2hcmA01 A:10-158 Protein tyrosine phosphatase superfamily                                                                                             CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeee..eeeee.hhhhhhhhhhhh.eeeeee.............eeee..........hhhhhhhhhhhhhhhhhh..eeeeee...hhhhhhhhhhhhhhhh..hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----------TYR_PHOSPHATASE_DUAL  PDB: A:10-150 UniProt: 10-150                                                                                          -------- PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------TYR_PHOSPHATASE_2  PDB: A:68-130 UniProt: 68-130               ---------------------------- PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2hcm A   0 SLGTSEAAPPPFARVAPALFIGNARAAGATELLVRAGITLCVNVSRQQPGPRAPGVAELRVPVFDDPAEDLLTHLEPTCAAMEAAVRDGGSCLVYCKNGRSRSAAVCTAYLMRHRGHSLDRAFQMVKSARPVAEPNLGFWAQLQKYEQTLQAQAILPRE 158
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (1, 1)

Pfam Domains (0, 0)

Gene Ontology (8, 8)

Asymmetric Unit(hide GO term definitions)

Chain A (DUS28_MOUSE | Q8BTR5)

molecular function
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0016791	phosphatase activity	Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate.
	GO:0004721	phosphoprotein phosphatase activity	Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity.
	GO:0004725	protein tyrosine phosphatase activity	Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate.
	GO:0008138	protein tyrosine/serine/threonine phosphatase activity	Catalysis of the reactions: protein serine + H2O = protein serine + phosphate; protein threonine phosphate + H2O = protein threonine + phosphate; and protein tyrosine phosphate + H2O = protein tyrosine + phosphate.
biological process
	GO:0016311	dephosphorylation	The process of removing one or more phosphoric (ester or anhydride) residues from a molecule.
	GO:0035335	peptidyl-tyrosine dephosphorylation	The removal of phosphoric residues from peptidyl-O-phospho-tyrosine to form peptidyl-tyrosine.
	GO:0006470	protein dephosphorylation	The process of removing one or more phosphoric residues from a protein.

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