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(-) Description

Title :  3D STRUCTURE OF BACILLUS ANTHRACIS GLOBIN
 
Authors :  K. Ravi Kumar, Rajnee, J. Safdar, S. T. Pasha, G. S. Khatri, T. Fatma
Date :  07 Jun 06  (Deposition) - 18 Jul 06  (Release) - 18 Jul 06  (Revision)
Method :  THEORETICAL MODEL
Resolution :  NOT APPLICABLE
Chains :  Theor. Model :  A
Keywords :  Baglb, Bacn, Anthrax Globin, Globin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Ravi Kumar, Rajnee, J. Safdar, S. T. Pasha, G. S. Khatri, T. Fatma
A Hypothetical Open Reading Frame Encoding Truncated Hemoglobin Like Protein From Bacillus Anthracis
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PROTOZOAN/CYANOBACTERIAL GLOBIN FAMILY PROTEIN
    Chains: A
    Fragment: RESIDUES 5-127
    Organism Common: BACTERIA
    Organism Scientific: BACILLUS ANTHRACIS
    Other Details: GLOBIN
    Strain: AMES

 Structural Features

(-) Chains, Units

  
Theoretical Model : 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2H8J)

(-) Sites  (0, 0)

(no "Site" information available for 2H8J)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2H8J)

(-) Cis Peptide Bonds  (1, 1)

Theoretical Model
No.Residues
1Asp A:41 -Asp A:42

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2H8J)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2H8J)

(-) Exons   (0, 0)

(no "Exon" information available for 2H8J)

(-) Sequences/Alignments

Theoretical Model
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:123
 aligned with Q81TQ7_BACAN | Q81TQ7 from UniProtKB/TrEMBL  Length:132

    Alignment length:123
                                    14        24        34        44        54        64        74        84        94       104       114       124   
         Q81TQ7_BACAN     5 PMTPFEAIGGEQCIEILVDTFYSYVSKHPDLSPIFPDDLTETARKQKQFLTQYLGGPNLYTEEHGHPMLRARHLPFEITPKRAEAWLSCMEQAMDDTGVHGHIREFVFERLALTAQHMVNTPN 127
               SCOP domains --------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhh...hhhhhhhh..hhhhhhh....hhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------- Transcript
                 2h8j A   5 PMTPFEAIGGEQCIEILVDTFYSYVSKHPDLSPIFPDDLTETARKQKQFLTQYLGGPNLYTEEHGHPMLRARHLPFEITPKRAEAWLSCMEQAMDDTGVHGHIREFVFERLALTAQHMVNTPN 127
                                    14        24        34        44        54        64        74        84        94       104       114       124
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2H8J)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2H8J)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2H8J)

(-) Gene Ontology  (3, 3)

Theoretical Model(hide GO term definitions)
Chain A   (Q81TQ7_BACAN | Q81TQ7)
molecular function
    GO:0020037    heme binding    Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
    GO:0019825    oxygen binding    Interacting selectively and non-covalently with oxygen (O2).
biological process
    GO:0015671    oxygen transport    The directed movement of oxygen (O2) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.

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  Cis Peptide Bonds
    Asp A:41 - Asp A:42   [ RasMol ]  
 

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  2h8j
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q81TQ7_BACAN | Q81TQ7: 2iis 5v3t 5v3u 5v3v

(-) Related Entries Specified in the PDB File

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