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(-) Description

Title :  CRYSTAL STRUCTURE OF PROTEIN OF UNKNOWN FUNCTION PG1108 FROM PORPHYROMONAS GINGIVALIS W83
 
Authors :  B. Nocek, L. Bigelow, S. Moy, A. Joachimiak, Midwest Center For Stru Genomics (Mcsg)
Date :  26 May 06  (Deposition) - 25 Jul 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.01
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  A (2x),B (2x),C (2x),D (2x)
Keywords :  Hypothetical Protein, Sad, Mcsg, Psi, Structural Genomics, Protein Structure Initiative, Midwest Center For Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Nocek, L. Bigelow, S. Moy, A. Joachimiak
Crystal Structure Of Hypothetical Protein Pg_1108 From Porphyromonas Gingivalis W83
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN PG_1108
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: PORPHYROMONAS GINGIVALIS
    Organism Taxid: 837

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): ABCD
Biological Unit 2 (2x): A (2x)B (2x)C (2x)D (2x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric Unit (1, 3)
No.NameCountTypeFull Name
1MG3Ligand/IonMAGNESIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:29 , ASP A:32 , LYS A:34BINDING SITE FOR RESIDUE MG A 1001
2AC2SOFTWAREVAL B:29 , ASP B:32 , LYS B:34 , HOH B:1018 , HOH B:1045BINDING SITE FOR RESIDUE MG B 1001
3AC3SOFTWAREVAL C:29 , ASP C:32 , LYS C:34 , HOH C:1003 , HOH C:1009BINDING SITE FOR RESIDUE MG C 1001

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2H5N)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2H5N)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2H5N)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2H5N)

(-) Exons   (0, 0)

(no "Exon" information available for 2H5N)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:132
 aligned with Q7MVF6_PORGI | Q7MVF6 from UniProtKB/TrEMBL  Length:133

    Alignment length:132
                                    10        20        30        40        50        60        70        80        90       100       110       120       130  
         Q7MVF6_PORGI     1 MGLGRQSLNIMTFSGQELTAIIKMAKSMVMADGKIKPAEIAVMTREFMRFGILQDQVDLLLKASDSIEASQAVALIARMDEERKKYVASYLGVIMASDGDIDDNELALWTLISTLCGLPTMTVMEAINNMKN 132
               SCOP domains d2h5na1 A:1-132 Hypothetical protein PG1108                                                                                          SCOP domains
               CATH domains -------------2h5nA01 A:14-132 TerB-like                                                                                              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .............hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.hhhhhhhhhhhhh..hhhhhhhhhhh.hhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh....hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2h5n A   1 MGLGRQSLNIMTFSGQELTAIIKMAKSMVMADGKIKPAEIAVMTREFMRFGILQDQVDLLLKASDSIEASQAVALIARMDEERKKYVASYLGVIMASDGDIDDNELALWTLISTLCGLPTMTVMEAINNMKN 132
                                    10        20        30        40        50        60        70        80        90       100       110       120       130  


Chain B from PDB  Type:PROTEIN  Length:122
 aligned with Q7MVF6_PORGI | Q7MVF6 from UniProtKB/TrEMBL  Length:133

    Alignment length:122
                                    19        29        39        49        59        69        79        89        99       109       119       129  
         Q7MVF6_PORGI    10 IMTFSGQELTAIIKMAKSMVMADGKIKPAEIAVMTREFMRFGILQDQVDLLLKASDSIEASQAVALIARMDEERKKYVASYLGVIMASDGDIDDNELALWTLISTLCGLPTMTVMEAINNMK 131
               SCOP domains d2h5nb_ B: Hypothetical protein PG1108                                                                                     SCOP domains
               CATH domains ----2h5nB01 B:14-131 TerB-like                                                                                             CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh...hhhhhhhhhhh..hhhhhhhhhhh.hhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh.....hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
                 2h5n B  10 IMTFSGQELTAIIKMAKSMVMADGKIKPAEIAVMTREFMRFGILQDQVDLLLKASDSIEASQAVALIARMDEERKKYVASYLGVIMASDGDIDDNELALWTLISTLCGLPTMTVMEAINNMK 131
                                    19        29        39        49        59        69        79        89        99       109       119       129  


Chain C from PDB  Type:PROTEIN  Length:124
 aligned with Q7MVF6_PORGI | Q7MVF6 from UniProtKB/TrEMBL  Length:133

    Alignment length:124
                                    19        29        39        49        59        69        79        89        99       109       119       129    
         Q7MVF6_PORGI    10 IMTFSGQELTAIIKMAKSMVMADGKIKPAEIAVMTREFMRFGILQDQVDLLLKASDSIEASQAVALIARMDEERKKYVASYLGVIMASDGDIDDNELALWTLISTLCGLPTMTVMEAINNMKNL 133
               SCOP domains d2h5nc_ C: Hypothetical protein PG1108                                                                                       SCOP domains
               CATH domains 2h5nC00 C:10-133 TerB-like                                                                                                   CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.hhhhhhhhhhhhh..hhhhhhhhhhh.hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh....hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 2h5n C  10 IMTFSGQELTAIIKMAKSMVMADGKIKPAEIAVMTREFMRFGILQDQVDLLLKASDSIEASQAVALIARMDEERKKYVASYLGVIMASDGDIDDNELALWTLISTLCGLPTMTVMEAINNMKNL 133
                                    19        29        39        49        59        69        79        89        99       109       119       129    


Chain D from PDB  Type:PROTEIN  Length:123
 aligned with Q7MVF6_PORGI | Q7MVF6 from UniProtKB/TrEMBL  Length:133

    Alignment length:123
                                    20        30        40        50        60        70        80        90       100       110       120       130   
         Q7MVF6_PORGI    11 MTFSGQELTAIIKMAKSMVMADGKIKPAEIAVMTREFMRFGILQDQVDLLLKASDSIEASQAVALIARMDEERKKYVASYLGVIMASDGDIDDNELALWTLISTLCGLPTMTVMEAINNMKNL 133
               SCOP domains d2h5nd_ D: Hypothetical protein PG1108                                                                                      SCOP domains
               CATH domains 2h5nD00 D:11-133 TerB-like                                                                                                  CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.hhhhhhhhhhhhh..hhhhhhhhhhh.hhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh....hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------- Transcript
                 2h5n D  11 MTFSGQELTAIIKMAKSMVMADGKIKPAEIAVMTREFMRFGILQDQVDLLLKASDSIEASQAVALIARMDEERKKYVASYLGVIMASDGDIDDNELALWTLISTLCGLPTMTVMEAINNMKNL 133
                                    20        30        40        50        60        70        80        90       100       110       120       130
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 4)

Asymmetric Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2H5N)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (Q7MVF6_PORGI | Q7MVF6)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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