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(-) Description

Authors :  T. S. Kumarevel, A. Shinkai, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  14 May 06  (Deposition) - 15 May 07  (Release) - 06 Oct 09  (Revision)
Resolution :  2.80
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Biol. Unit 2:  A  (1x)
Keywords :  Transcription, Regulator, Repressor, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi (Keyword Search: [Gene Ontology, PubMed, Web (Google))
Reference :  T. S. Kumarevel, T. Tanaka, A. Shinkai, S. Yokoyama
Crystal Structure Of Ttha0807, A Ccpa Regulator, From Thermus Thermophilus Hb8.
Proteins 2009
PubMed-ID: 19714777  |  Reference-DOI: 10.1002/PROT.22552
(for further references see the PDB file header)

(-) Compounds

    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    Organism ScientificTHERMUS THERMOPHILUS
    Organism Taxid274

 Structural Features

(-) Chains, Units

Asymmetric Unit A
Biological Unit 1 (2x)A
Biological Unit 2 (1x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2H0A)

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
1Pro A:244 -Pro A:245
2Pro A:337 -Pro A:338

 Sequence-Structure Mapping

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:258
 aligned with Q5SK45_THET8 | Q5SK45 from UniProtKB/TrEMBL  Length:344

    Alignment length:276
                                    74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334      
               SCOP domains d2h0aa_ A: automated matches                                                                                                                                                                                                                                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee....hhhhhhhhhhhhhhhhhhh.eeee..........---------....eeeee.....------.......eeee.......eeeee.hhhhhhhhhhhhh.....eeeeee......---.hhhhhhhhhhhhhhhhh....hhh.eeee..hhhhhhhhhhhhhh.....eeee..hhhhhhhhhhhhhh........eeeeee....hhhhhh.eeee.hhhhhhhhhhhhhhhhhh.......eeee..eee........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                                    74        84        94       104   |     -   |   124      |  -   |   144       154       164       174       184      |  -|      204       214       224       234       244       254       264       274       284       294       304       314       324       334      
                                                                     108       118          131    138                                                  191 195                                                                                                                                                 

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 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)
Chain A   (Q5SK45_THET8 | Q5SK45)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0003700    transcription factor activity, sequence-specific DNA binding    Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
biological process
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.


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    Pro A:244 - Pro A:245   [ RasMol ]  
    Pro A:337 - Pro A:338   [ RasMol ]  
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