2GVY - JenaLib

Asymmetric Unit (16, 16)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	TYR A:88 , TRP A:190 , SER A:193 , LEU A:194 , ASN A:197 , HOH A:1180	BINDING SITE FOR RESIDUE NAG A 500
02	AC2	SOFTWARE	TYR A:155 , LYS A:209 , GLC A:1001 , HOH A:1309	BINDING SITE FOR RESIDUE BGC A 1002
03	AC3	SOFTWARE	TYR A:155 , LEU A:166 , HIS A:210 , GLC A:1000 , BGC A:1002 , HOH A:1066 , HOH A:1069 , HOH A:1168 , HOH A:1312 , HOH A:1327 , HOH A:1372	BINDING SITE FOR RESIDUE GLC A 1001
04	AC4	SOFTWARE	TYR A:82 , HIS A:122 , ARG A:204 , ASP A:206 , THR A:207 , GLU A:230 , HIS A:296 , ASP A:297 , ARG A:344 , GLC A:999 , GLC A:1001 , HOH A:1069 , HOH A:1372	BINDING SITE FOR RESIDUE GLC A 1000
05	AC5	SOFTWARE	HIS A:80 , TYR A:82 , TRP A:83 , LEU A:173 , ASP A:340 , ARG A:344 , GLC A:1000 , HOH A:1030 , HOH A:1069 , HOH A:1310 , HOH A:1311 , HOH A:1312 , HOH A:1313	BINDING SITE FOR RESIDUE GLC A 999
06	AC6	SOFTWARE	GLY A:234 , ASP A:235 , PRO A:236 , GLC A:1004 , HOH A:1141 , HOH A:1194 , HOH A:1376	BINDING SITE FOR RESIDUE BGC A 1003
07	AC7	SOFTWARE	ASP A:233 , GLY A:234 , ASP A:235 , TYR A:256 , BGC A:1003 , HOH A:1374	BINDING SITE FOR RESIDUE GLC A 1004
08	AC8	SOFTWARE	LYS A:280 , GLC A:1012 , HOH A:1333	BINDING SITE FOR RESIDUE GLC A 1011
09	AC9	SOFTWARE	TYR A:382 , LYS A:383 , GLC A:1011 , HOH A:1146 , HOH A:1344	BINDING SITE FOR RESIDUE GLC A 1012
10	BC1	SOFTWARE	ASN A:121 , GLU A:162 , ASP A:175 , HIS A:210 , HOH A:1013 , HOH A:1083 , HOH A:1211	BINDING SITE FOR RESIDUE CA A 801
11	BC2	SOFTWARE	TYR B:88 , TRP B:190 , SER B:193 , ASN B:197 , HOH B:1159 , HOH B:1342	BINDING SITE FOR RESIDUE NDG B 500
12	BC3	SOFTWARE	TYR B:82 , HIS B:122 , ARG B:204 , ASP B:206 , THR B:207 , GLU B:230 , HIS B:296 , ASP B:297 , ARG B:344 , GLC B:999 , GLC B:1001	BINDING SITE FOR RESIDUE GLC B 1000
13	BC4	SOFTWARE	TYR B:82 , TRP B:83 , ASP B:340 , ARG B:344 , GLC B:1000 , HOH B:1163 , HOH B:1178 , HOH B:1357	BINDING SITE FOR RESIDUE GLC B 999
14	BC5	SOFTWARE	TYR B:155 , LYS B:209 , GLC B:1001 , HOH B:1358	BINDING SITE FOR RESIDUE BGC B 1002
15	BC6	SOFTWARE	TYR B:155 , LEU B:166 , HIS B:210 , GLC B:1000 , BGC B:1002 , HOH B:1040	BINDING SITE FOR RESIDUE GLC B 1001
16	BC7	SOFTWARE	ASN B:121 , GLU B:162 , ASP B:175 , HIS B:210 , HOH B:1006 , HOH B:1023 , HOH B:1252	BINDING SITE FOR RESIDUE CA B 802

SS Bonds (8, 8)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:476
 aligned with AMYA1_ASPOR | P0C1B3 from UniProtKB/Swiss-Prot  Length:499

    Alignment length:476
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491      
          AMYA1_ASPOR    22 ATPADWRSQSIYFLLTDRFARTDGSTTATCNTADQKYCGGTWQGIIDKLDYIQGMGFTAIWITPVTAQLPQTTAYGDAYHGYWQQDIYSLNENYGTADDLKALSSALHERGMYLMVDVVANHMGYDGAGSSVDYSVFKPFSSQDYFHPFCFIQNYEDQTQVEDCWLGDNTVSLPDLDTTKDVVKNEWYDWVGSLVSNYSIDGLRIDTVKHVQKDFWPGYNKAAGVYCIGEVLDGDPAYTCPYQNVMDGVLNYPIYYPLLNAFKSTSGSMDDLYNMINTVKSDCPDSTLLGTFVENHDNPRFASYTNDIALAKNVAAFIILNDGIPIIYAGQEQHYAGGNDPANREATWLSGYPTDSELYKLIASANAIRNYAISKDTGFVTYKNWPIYKDDTTIAMRKGTDGSQIVTILSNKGASGDSYTLSLSGAGYTAGQQLTEVIGCTTVTVGSDGNVPVPMAGGLPRVLYPTEKLAGSKICS 497
               SCOP domains d2gvya2 A:1-381 Fungal alpha-amylases                                                                                                                                                                                                                                                                                                                                                        d2gvya1 A:382-476 Fungal alpha-amylase                                                          SCOP domains
               CATH domains 2gvyA01 A:1-374 Glycosidases                                                                                                                                                                                                                                                                                                                                                          2gvyA02 A:375-476 Golgi alpha-mannosidase II                                                           CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhh..eeeehhhhhh..........hhhhh.....hhhhhhhhhhhhhhh...eeee...eee...............eeeeeee.....hhhhhhhhhhhhhhh..eeeeee......ee.hhhhhhhhhh....hhhhh..........hhhhhhhh.ee...eee......hhhhhhhhhhhhhhhhhhhh..eeee.hhhhhhhhhhhhhhhhhh.eeee.....hhhhhhhhhhh..ee.hhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.hhhh.ee........hhhhhh.hhhhhhhhhhhhhhh..eeeee.hhhhh...........hhhhhh....hhhhhhhhhhhhhhhhhhhhh........eeeeee..eeeeee......eeeeee........eeeee.........eeee....eeee......eeeee.....eeeee.hhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gvy A   1 ATPADWRSQSIYFLLTDRFARTDGSTTATCNTADQKYCGGTWQGIIDKLDYIQGMGFTAIWITPVTAQLPQTTAYGDAYHGYWQQDIYSLNENYGTADDLKALSSALHERGMYLMVDVVANHMGYDGAGSSVDYSVFKPFSSQDYFHPFCFIQNYEDQTQVEDCWLGDNTVSLPDLDTTKDVVKNEWYDWVGSLVSNYSIDGLRIDTVKHVQKDFWPGYNKAAGVYCIGEVLDGDPAYTCPYQNVMDGVLNYPIYYPLLNAFKSTSGSMDDLYNMINTVKSDCPDSTLLGTFVENHDNPRFASYTNDIALAKNVAAFIILNDGIPIIYAGQEQHYAGGNDPANREATWLSGYPTDSELYKLIASANAIRNYAISKDTGFVTYKNWPIYKDDTTIAMRKGTDGSQIVTILSNKGASGDSYTLSLSGAGYTAGQQLTEVIGCTTVTVGSDGNVPVPMAGGLPRVLYPTEKLAGSKICS 476
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470

Chain B from PDB  Type:PROTEIN  Length:476
 aligned with AMYA1_ASPOR | P0C1B3 from UniProtKB/Swiss-Prot  Length:499

    Alignment length:476
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491      
          AMYA1_ASPOR    22 ATPADWRSQSIYFLLTDRFARTDGSTTATCNTADQKYCGGTWQGIIDKLDYIQGMGFTAIWITPVTAQLPQTTAYGDAYHGYWQQDIYSLNENYGTADDLKALSSALHERGMYLMVDVVANHMGYDGAGSSVDYSVFKPFSSQDYFHPFCFIQNYEDQTQVEDCWLGDNTVSLPDLDTTKDVVKNEWYDWVGSLVSNYSIDGLRIDTVKHVQKDFWPGYNKAAGVYCIGEVLDGDPAYTCPYQNVMDGVLNYPIYYPLLNAFKSTSGSMDDLYNMINTVKSDCPDSTLLGTFVENHDNPRFASYTNDIALAKNVAAFIILNDGIPIIYAGQEQHYAGGNDPANREATWLSGYPTDSELYKLIASANAIRNYAISKDTGFVTYKNWPIYKDDTTIAMRKGTDGSQIVTILSNKGASGDSYTLSLSGAGYTAGQQLTEVIGCTTVTVGSDGNVPVPMAGGLPRVLYPTEKLAGSKICS 497
               SCOP domains d2gvyb2 B:1-381 Fungal alpha-amylases                                                                                                                                                                                                                                                                                                                                                        d2gvyb1 B:382-476 Fungal alpha-amylase                                                          SCOP domains
               CATH domains 2gvyB01 B:1-374 Glycosidases                                                                                                                                                                                                                                                                                                                                                          2gvyB02 B:375-476 Golgi alpha-mannosidase II                                                           CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhh...eeeehhhhhh..........hhhhh.....hhhhhhhhhhhhhh....eeee...eee...............eeeeeee.hhhhhhhhhhhhhhhhhhh..eeeeee......ee.hhhhhhhhhh....hhhhh..........hhhhhhhh.ee...eee......hhhhhhhhhhhhhhhhhhhh..eeee.hhhhhhhhhhhhhhhhhh.eeee.....hhhhhhhhhhh..ee.hhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.hhhh.ee........hhhhhh.hhhhhhhhhhhhhhh..eeeee.hhhhh...........hhhhhh....hhhhhhhhhhhhhhhhhhhhh........eeeeee..eeeeee......eeeeee........eeeee.........eeee....eeee......eeeee.....eeeee.hhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gvy B   1 ATPADWRSQSIYFLLTDRFARTDGSTTATCNTADQKYCGGTWQGIIDKLDYIQGMGFTAIWITPVTAQLPQTTAYGDAYHGYWQQDIYSLNENYGTADDLKALSSALHERGMYLMVDVVANHMGYDGAGSSVDYSVFKPFSSQDYFHPFCFIQNYEDQTQVEDCWLGDNTVSLPDLDTTKDVVKNEWYDWVGSLVSNYSIDGLRIDTVKHVQKDFWPGYNKAAGVYCIGEVLDGDPAYTCPYQNVMDGVLNYPIYYPLLNAFKSTSGSMDDLYNMINTVKSDCPDSTLLGTFVENHDNPRFASYTNDIALAKNVAAFIILNDGIPIIYAGQEQHYAGGNDPANREATWLSGYPTDSELYKLIASANAIRNYAISKDTGFVTYKNWPIYKDDTTIAMRKGTDGSQIVTILSNKGASGDSYTLSLSGAGYTAGQQLTEVIGCTTVTVGSDGNVPVPMAGGLPRVLYPTEKLAGSKICS 476
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (2, 4)

CATH Domains (2, 4)

Pfam Domains (0, 0)

Gene Ontology (16, 16)

Asymmetric Unit(hide GO term definitions)

Chain A,B (AMYA1_ASPOR | P0C1B3)

molecular function
	GO:0004556	alpha-amylase activity	Catalysis of the endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more alpha-(1->4)-linked D-glucose units.
	GO:0005509	calcium ion binding	Interacting selectively and non-covalently with calcium ions (Ca2+).
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0043169	cation binding	Interacting selectively and non-covalently with cations, charged atoms or groups of atoms with a net positive charge.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0016798	hydrolase activity, acting on glycosyl bonds	Catalysis of the hydrolysis of any glycosyl bond.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
biological process
	GO:0016052	carbohydrate catabolic process	The chemical reactions and pathways resulting in the breakdown of carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y.
	GO:0005975	carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
cellular component
	GO:0030428	cell septum	A structure composed of peptidoglycan and often chitin in addition to other materials. It usually forms perpendicular to the long axis of a cell or hypha and grows centripetally from the cell wall to the center of the cell and often functions in the compartmentalization of a cell into two daughter cells.
	GO:0030287	cell wall-bounded periplasmic space	The region between the plasma membrane and the cell wall in organisms lacking an outer cell membrane such as yeast and Gram positive bacteria. The region is thinner than the equivalent in Gram negative bacteria.
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0009277	fungal-type cell wall	A rigid yet dynamic structure surrounding the plasma membrane that affords protection from stresses and contributes to cell morphogenesis, consisting of extensively cross-linked glycoproteins and carbohydrates. The glycoproteins may be modified with N- or O-linked carbohydrates, or glycosylphosphatidylinositol (GPI) anchors; the polysaccharides are primarily branched glucans, including beta-linked and alpha-linked glucans, and may also include chitin and other carbohydrate polymers, but not cellulose or pectin. Enzymes involved in cell wall biosynthesis are also found in the cell wall. Note that some forms of fungi develop a capsule outside of the cell wall under certain circumstances; this is considered a separate structure.
	GO:0032163	hyphal septin band	A septin band, i.e. a diffuse ring composed of a series of septin bars running parallel to the long axis of the cell, located at the junction between the mother cell and the germ tube (hypha) of a fungal cell growing filamentously.
	GO:0031521	spitzenkorper	Structure within the hyphal tip of filamentous fungi that acts as an organizing center for hyphal tip growth; may function to supply vesicles to the elongating tip and/or to organize cytoskeletal microfilaments.

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Asymmetric Unit
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	Ligands, Modified Residues, Ions
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	Cis Peptide Bonds
		Asp A:340 - Pro A:341	[ RasMol ]
		Asp B:340 - Pro B:341	[ RasMol ]
		Lys A:138 - Pro A:139	[ RasMol ]
		Lys B:138 - Pro B:139	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 16)

Sites (16, 16)

SS Bonds (8, 8)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (2, 4)

CATH Domains (2, 4)

Pfam Domains (0, 0)

Gene Ontology (16, 16)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File