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(-) Description

Title :  CRYSTAL STRUCTURE OF XC5357 FROM XANTHOMONAS CAMPESTRIS: A PUTATIVE TETRACENOMYCIN POLYKETIDE SYNTHESIS PROTEIN ADOPTING A NOVEL CUPIN SUBFAMILY STRUCTURE
 
Authors :  K. -H. Chin, C. C. Chou, A. H. -J. Wang, S. -H. Chou
Date :  28 Apr 06  (Deposition) - 07 Nov 06  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.40
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Xanthomonas Campestris, X-Ray Diffraction, Cupin, Tetracenomycin Polyketide, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. -H. Chin, C. C. Chou, A. H. -J. Wang, S. -H. Chou
Crystal Structure Of Xc5357 From Xanthomonas Campestris: A Putative Tetracenomycin Polyketide Synthesis Protein Adopting A Novel Cupin Subfamily Structure
Proteins V. 65 1046 2006
PubMed-ID: 17029242  |  Reference-DOI: 10.1002/PROT.21142
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - TETRACENOMYCIN POLYKETIDE SYNTHESIS PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Plasmid: PET30
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Organism Scientific: XANTHOMONAS CAMPESTRIS
    Organism Taxid: 339

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2GU9)

(-) Sites  (0, 0)

(no "Site" information available for 2GU9)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2GU9)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1His A:97 -Pro A:98
2His B:97 -Pro B:98

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2GU9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2GU9)

(-) Exons   (0, 0)

(no "Exon" information available for 2GU9)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:111
 aligned with Q8PBM3_XANCP | Q8PBM3 from UniProtKB/TrEMBL  Length:113

    Alignment length:111
                                    11        21        31        41        51        61        71        81        91       101       111 
         Q8PBM3_XANCP     2 QYATLELNNAFKVLFSLRQVQAAEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIVDGHTQALQAGSLIAIERGQAHEIRNTGDTPLKTVNFYHPPAYDAQGEPLPAGE 112
               SCOP domains --------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.......eeeeee..eeeeeeee....eee.........eeeeeeee..eeeee..eeeee...eeeee.....eeee......eeeeeeee............... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------- Transcript
                 2gu9 A   2 QYATLELNNAFKVLFSLRQVQAAEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIVDGHTQALQAGSLIAIERGQAHEIRNTGDTPLKTVNFYHPPAYDAQGEPLPAGE 112
                                    11        21        31        41        51        61        71        81        91       101       111 


Chain B from PDB  Type:PROTEIN  Length:110
 aligned with Q8PBM3_XANCP | Q8PBM3 from UniProtKB/TrEMBL  Length:113

    Alignment length:110
                                    11        21        31        41        51        61        71        81        91       101       111
         Q8PBM3_XANCP     2 QYATLELNNAFKVLFSLRQVQAAEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIVDGHTQALQAGSLIAIERGQAHEIRNTGDTPLKTVNFYHPPAYDAQGEPLPAG 111
               SCOP domains -------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee......eeeeeee..eeeeeeee....ee..........eeeeeeee..eeeee..eeeee...eeeee.....eeeee.....eeeeeeee.............. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                 2gu9 B   2 QYATLELNNAFKVLFSLRQVQAAEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIVDGHTQALQAGSLIAIERGQAHEIRNTGDTPLKTVNFYHPPAYDAQGEPLPAG 111
                                    11        21        31        41        51        61        71        81        91       101       111
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2GU9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2GU9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2GU9)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (Q8PBM3_XANCP | Q8PBM3)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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  Cis Peptide Bonds
    His A:97 - Pro A:98   [ RasMol ]  
    His B:97 - Pro B:98   [ RasMol ]  
 

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 Related Entries

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        Q8PBM3_XANCP | Q8PBM3: 3h50

(-) Related Entries Specified in the PDB File

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