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(-) Description

Title :  REDUCED FORM OF ADAP HSH3-N-DOMAIN
 
Authors :  J. Zimmermann, R. Kuehne, C. Freund
Date :  28 Apr 06  (Deposition) - 05 Jun 07  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Sh3, Redox, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. Zimmermann, R. Kuhne, M. Sylvester, C. Freund
Redox-Regulated Conformational Changes In An Sh3 Domain
Biochemistry V. 46 6971 2007
PubMed-ID: 17511475  |  Reference-DOI: 10.1021/BI700437R
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - FYN-BINDING PROTEIN
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System StrainBL21 DE3
    Expression System Taxid469008
    Expression System Vector TypePET24D
    FragmentHSH3-N (REDUCED)
    GeneFYB, SLAP130
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymADAP, FYN-T-BINDING PROTEIN, FYB-120/130, P120/P130, SLP-76-ASSOCIATED PHOSPHOPROTEIN, SLAP-130

 Structural Features

(-) Chains, Units

  
NMR Structure (20x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2GTJ)

(-) Sites  (0, 0)

(no "Site" information available for 2GTJ)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2GTJ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2GTJ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2GTJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2GTJ)

(-) Exons   (3, 3)

NMR Structure (3, 3)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.5aENST000003515785aENSE00002069865chr5:39219708-39219545164FYB_HUMAN-00--
1.9gENST000003515789gENSE00000971275chr5:39203089-392019281162FYB_HUMAN1-3793790--
1.10ENST0000035157810ENSE00000802112chr5:39153706-39153550157FYB_HUMAN379-431530--
1.11ENST0000035157811ENSE00001285024chr5:39141243-3914119747FYB_HUMAN431-447170--
1.12ENST0000035157812ENSE00001641713chr5:39139354-3913933520FYB_HUMAN447-45370--
1.13ENST0000035157813ENSE00001008629chr5:39138793-3913875935FYB_HUMAN454-465120--
1.14ENST0000035157814ENSE00001008632chr5:39137822-39137702121FYB_HUMAN465-505411A:1-2020
1.15ENST0000035157815ENSE00000971278chr5:39135116-39134957160FYB_HUMAN506-559541A:21-7454
1.16ENST0000035157816ENSE00000741865chr5:39134451-39134310142FYB_HUMAN559-606481A:74-96 (gaps)31
1.17ENST0000035157817ENSE00001008625chr5:39130714-3913069223FYB_HUMAN606-61490--
1.18ENST0000035157818ENSE00000802107chr5:39127909-3912784367FYB_HUMAN614-636230--
1.20ENST0000035157820ENSE00001008634chr5:39124380-3912435526FYB_HUMAN636-645100--
1.21ENST0000035157821ENSE00001285036chr5:39122504-3912243867FYB_HUMAN645-667230--
1.22ENST0000035157822ENSE00000971282chr5:39119736-39119637100FYB_HUMAN667-700340--
1.23ENST0000035157823ENSE00000971283chr5:39119138-39118976163FYB_HUMAN701-755550--
1.24ENST0000035157824ENSE00001285088chr5:39110491-3911045834FYB_HUMAN755-766120--
1.25ENST0000035157825ENSE00001378592chr5:39108364-3910833332FYB_HUMAN766-777120--
1.26cENST0000035157826cENSE00001770065chr5:39107567-391053382230FYB_HUMAN777-78370--

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:96
 aligned with FYB_HUMAN | O15117 from UniProtKB/Swiss-Prot  Length:783

    Alignment length:104
                                   495       505       515       525       535       545       555       565       575       585    
            FYB_HUMAN   486 EKKEQKEKEKKEQEIKKKFKLTGPIQVIHLAKACCDVKGGKNELSFKQGEQIEIIRITDNPEGKWLGRTARGSYGYIKTTAVEIDYDSLKLKKDSLGAPSRPIE 589
               SCOP domains -------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhh........eeeee...ee......ee.....eeeee.........eee.........hhh.eee..........--------.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.14           Exon 1.15  PDB: A:21-74 UniProt: 506-559              ------------------------------ Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------------------------------------Exon 1.16  PDB: A:74-96 (gaps)  Transcript 1 (2)
                 2gtj A   1 EKKEQKEKEKKEQEIKKKFKLTGPIQVIHLAKACCDVKGGKNELSFKQGEQIEIIRITDNPEGKWLGRTARGSYGYIKTTAVEIDYDSLKLKKD--------LE  96
                                    10        20        30        40        50        60        70        80        90   |     -  | 
                                                                                                                        94       95 

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2GTJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2GTJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2GTJ)

(-) Gene Ontology  (17, 17)

NMR Structure(hide GO term definitions)
Chain A   (FYB_HUMAN | O15117)
molecular function
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0032403    protein complex binding    Interacting selectively and non-covalently with any protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0005102    receptor binding    Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
biological process
    GO:0006607    NLS-bearing protein import into nucleus    The directed movement of a protein bearing a nuclear localization signal (NLS) from the cytoplasm into the nucleus, across the nuclear membrane.
    GO:0050852    T cell receptor signaling pathway    A series of molecular signals initiated by the cross-linking of an antigen receptor on a T cell.
    GO:0008150    biological_process    Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
    GO:0006955    immune response    Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat.
    GO:0035556    intracellular signal transduction    The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell.
    GO:0072659    protein localization to plasma membrane    A process in which a protein is transported to, or maintained in, a specific location in the plasma membrane.
    GO:0006468    protein phosphorylation    The process of introducing a phosphate group on to a protein.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
cellular component
    GO:0015629    actin cytoskeleton    The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes.
    GO:0030054    cell junction    A cellular component that forms a specialized region of connection between two or more cells or between a cell and the extracellular matrix. At a cell junction, anchoring proteins extend through the plasma membrane to link cytoskeletal proteins in one cell to cytoskeletal proteins in neighboring cells or to proteins in the extracellular matrix.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FYB_HUMAN | O151171ri9 2gto

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