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(-) Description

Title :  X-RAY CRYSTAL STRUCTURE OF PROTEIN YVFG FROM BACILLUS SUBTILIS. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET SR478.
 
Authors :  F. Forouhar, M. Su, S. Jayaraman, D. Wang, Y. Fang, K. Cunningham, K. Conover, L. -C. Ma, R. Xiao, T. B. Acton, G. T. Montelione, L. Tong, J. F. Hunt, Northeast Structural Genomics Consortium (Nesg)
Date :  26 Apr 06  (Deposition) - 09 May 06  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  A,B  (2x)
Biol. Unit 3:  A (2x),B (2x)
Keywords :  Alpha-Helical Protein, Structural Genomics, Psi, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Forouhar, M. Su, S. Jayaraman, D. Wang, Y. Fang, K. Cunningham, K. Conover, L. -C. Ma, R. Xiao, T. B. Acton, G. T. Montelione, L. Tong, J. F. Hunt
Crystal Structure Of The Hypothetical Protein Yvfg From Bacillus Subtilis, Northeast Structural Genomics Target Sr478
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN YVFG
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21
    Expression System Strain: BL21(DE3)+ MAGIC
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: YVFG
    Organism Scientific: BACILLUS SUBTILIS
    Organism Taxid: 1423
    Strain: 168

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): AB
Biological Unit 2 (2x): AB
Biological Unit 3 (2x): A (2x)B (2x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric Unit (2, 6)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE
2SO42Ligand/IonSULFATE ION
Biological Unit 1 (2, 6)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE
2SO42Ligand/IonSULFATE ION
Biological Unit 2 (2, 12)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE
2SO44Ligand/IonSULFATE ION
Biological Unit 3 (2, 6)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE
2SO42Ligand/IonSULFATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:48 , ASN A:49BINDING SITE FOR RESIDUE SO4 A 101
2AC2SOFTWAREGLU B:61 , ASN B:64 , ARG B:68BINDING SITE FOR RESIDUE SO4 B 102

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2GSV)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2GSV)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2GSV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2GSV)

(-) Exons   (0, 0)

(no "Exon" information available for 2GSV)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:67
 aligned with YVFG_BACSU | P71066 from UniProtKB/Swiss-Prot  Length:72

    Alignment length:67
                                    12        22        32        42        52        62       
            YVFG_BACSU    3 ELFSVPYFIENLKQHIEMNQSEDKIHAMNSYYRSVVSTLVQDQLTKNAVVLKRIQHLDEAYNKVKRG 69
               SCOP domains d2gsva1 A:3-69 Hypothetical protein YvfG                            SCOP domains
               CATH domains ------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                  2gsv A  3 ELFSVPYFIENLKQHIEmNQSEDKIHAmNSYYRSVVSTLVQDQLTKNAVVLKRIQHLDEAYNKVKRG 69
                                    12       |22       |32        42        52        62       
                                            20-MSE    30-MSE                                   


Chain B from PDB  Type:PROTEIN  Length:68
 aligned with YVFG_BACSU | P71066 from UniProtKB/Swiss-Prot  Length:72

    Alignment length:68
                                    11        21        31        41        51        61        
            YVFG_BACSU    2 SELFSVPYFIENLKQHIEMNQSEDKIHAMNSYYRSVVSTLVQDQLTKNAVVLKRIQHLDEAYNKVKRG 69
               SCOP domains d2gsvb_ B: Hypothetical protein YvfG                                 SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                  2gsv B  2 SELFSVPYFIENLKQHIEmNQSEDKIHAmNSYYRSVVSTLVQDQLTKNAVVLKRIQHLDEAYNKVKRG 69
                                    11        21        31        41        51        61        
                                             20-MSE    30-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2GSV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2GSV)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2GSV)

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 Related Entries

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UniProtKB/Swiss-Prot
        YVFG_BACSU | P71066: 2js1

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