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(-) Description

Title :  CRYSTAL STRUCTURE OF FLAVOPROTEIN HI0933 FROM HAEMOPHILUS INFLUENZAE RD
 
Authors :  A. M. Mulichak, Y. Patskovsky, L. J. Keefe, S. C. Almo, S. K. Burley, New Research Center For Structural Genomics (Nysgxrc)
Date :  20 Apr 06  (Deposition) - 30 May 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (2x)
Biol. Unit 3:  A  (4x)
Keywords :  Structural Genomics, Fad-Utilizing Protein, Flavoprotein, Psi, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. M. Mulichak, Y. Patskovsky, L. J. Keefe, S. C. Almo
Crystal Structure Of Hypothetical Flavoprotein Hi0933 From Haemophilus Influenzae Rd.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN HI0933
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: HI0933
    Organism Scientific: HAEMOPHILUS INFLUENZAE
    Organism Taxid: 727

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (1x): A
Biological Unit 2 (2x): A
Biological Unit 3 (4x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 9)

Asymmetric Unit (3, 9)
No.NameCountTypeFull Name
1FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2MSE7Mod. Amino AcidSELENOMETHIONINE
3SO41Ligand/IonSULFATE ION
Biological Unit 1 (3, 9)
No.NameCountTypeFull Name
1FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2MSE7Mod. Amino AcidSELENOMETHIONINE
3SO41Ligand/IonSULFATE ION
Biological Unit 2 (3, 18)
No.NameCountTypeFull Name
1FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2MSE14Mod. Amino AcidSELENOMETHIONINE
3SO42Ligand/IonSULFATE ION
Biological Unit 3 (3, 36)
No.NameCountTypeFull Name
1FAD4Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2MSE28Mod. Amino AcidSELENOMETHIONINE
3SO44Ligand/IonSULFATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:278 , GLN A:281 , ARG A:289BINDING SITE FOR RESIDUE SO4 A 402
2AC2SOFTWAREILE A:10 , GLY A:11 , GLY A:13 , ALA A:14 , ALA A:15 , ASP A:34 , ASN A:35 , ARG A:41 , LYS A:42 , MSE A:45 , SER A:46 , GLY A:47 , ASN A:52 , GLU A:131 , VAL A:132 , ALA A:163 , THR A:164 , GLY A:165 , SER A:168 , MSE A:169 , THR A:175 , PHE A:177 , GLU A:342 , GLY A:370 , GLU A:371 , GLY A:381 , ASN A:383 , PHE A:384 , HOH A:408 , HOH A:421 , HOH A:426 , HOH A:427 , HOH A:429 , HOH A:449 , HOH A:543 , HOH A:546BINDING SITE FOR RESIDUE FAD A 403

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2GQF)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2GQF)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2GQF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2GQF)

(-) Exons   (0, 0)

(no "Exon" information available for 2GQF)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:401
 aligned with Y933_HAEIN | P44941 from UniProtKB/Swiss-Prot  Length:401

    Alignment length:401
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400 
           Y933_HAEIN     1 MSQYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATGGLSMPGLGATPFGYQIAEQFGIPVIPPRASLVPFTYRETDKFLTALSGISLPVTITALCGKSFYNQLLFTHRGISGPAVLQISNYWQPTESVEIDLLPNHNVEEEINQAKQSSPKQMLKTILVRLLPKKLVELWIEQGIVQDEVIANISKVRVKNLVDFIHHWEFTPNGTEGYRTAEVTMGGVDTKVISSKTMESNQVSGLYFIGEVLDVTGWLGGYNFQWAWSSAYACALSISRQ 401
               SCOP domains d2gqfa1 A:1-194,A:343-401 Hypothetical protein HI0933                                                                                                                                             d2gqfa2 A:195-342 Hypothetical protein HI0933                                                                                                       d2gqfa1 A:1-194,A:343-401 Hypothetical protein HI0933       SCOP domains
               CATH domains -2gqfA01 A:2-192,A:344-401  [code=3.50.50.60, no name defined]                                                                                                                                  2gqfA02 A:193-265,A:327-343 Translation factors                          2gqfA03 A:266-326 HI0933 insert domain-like                  2gqfA02          2gqfA01 A:2-192,A:344-401                                  CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee..eeee..hhhhhhhhhhhhhh...eeee......hhhhhhhhhhh...ee...hhh.ee......hhhhhhhhhhhhhhhhhhhh...eee....eeee...hhhhhhhhhhhhhhhh.eee....eeeeee........eeeee..eeeee.eeee......hhhhh..hhhhhhhhhh...eeeeeee...ee.hhhhhhhhhhh..eeeeeeee....eeeeeeee...eeehhhhhhhh........eeee.....hhhhhhhhhhhhh...hhhhhhh...hhhhhhhhhhh......hhhhhhhhhhhhhhhhhhheee...ee.......eeeeee.hhhh............eee.hhhh..ee...hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gqf A   1 mSQYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILmSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEmLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATGGLSmPGLGATPFGYQIAEQFGIPVIPPRASLVPFTYRETDKFLTALSGISLPVTITALCGKSFYNQLLFTHRGISGPAVLQISNYWQPTESVEIDLLPNHNVEEEINQAKQSSPKQmLKTILVRLLPKKLVELWIEQGIVQDEVIANISKVRVKNLVDFIHHWEFTPNGTEGYRTAEVTmGGVDTKVISSKTmESNQVSGLYFIGEVLDVTGWLGGYNFQWAWSSAYACALSISRQ 401
                            |       10        20        30        40    |   50        60        70        80        90       100       110   |   120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280 |     290       300       310       320       330       340    |  350       360       370       380       390       400 
                            |                                          45-MSE                                                              114-MSE                                                169-MSE                                                                                                          282-MSE                                                        345-MSE      358-MSE                                       
                            1-MSE
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)
(-)
Class: Multi-domain proteins (alpha and beta) (2421)

(-) CATH Domains  (3, 3)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Alpha (13335)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2GQF)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A   (Y933_HAEIN | P44941)
molecular function
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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