2GQ2 - JenaLib

Asym./Biol. Unit - manually (Jmol Viewer)

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   MYCOBACTERIUM TUBERCULOSIS THYX-NADP COMPLEX

Authors :   P. Sampathkumar, S. Turley, C. H. Sibley, W. G. Hol

Date :   19 Apr 06 (Deposition) - 27 Jun 06 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.10

Chains :   Asym./Biol. Unit : A,B,C,D

Keywords :   M. Tuberculosis, Thyx, Fdts, Tscp, Flavin Dependent Thymidylate Synthase, Inhibitor Design, Bivalent Drugs, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   P. Sampathkumar, S. Turley, C. H. Sibley, W. G. Hol
Nadp+ Expels Both The Co-Factor And A Substrate Analog From The Mycobacterium Tuberculosis Thyx Active Site: Opportunities For Anti-Bacterial Drug Design.
J. Mol. Biol. V. 360 1 2006
PubMed-ID: 16730023 | Reference-DOI: 10.1016/J.JMB.2006.04.061
(for further references see the PDB file header)

Molecule 1 - THYMIDYLATE SYNTHASE THYX
	Chains	:	A, B, C, D
	EC Number	:	2.1.1.148
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET24D
	Expression System Strain	:	BL21(DE3)PLYSS
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	THYX, RV2754C
	Mutation	:	YES
	Organism Scientific	:	MYCOBACTERIUM TUBERCULOSIS H37RV
	Organism Taxid	:	83332
	Strain	:	H37RV
	Synonym	:	TS, TSASE

		1	2	3	4
Asymmetric/Biological Unit	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (6, 47)

No.	Name	Count	Type	Full Name
1	GOL	7	Ligand/Ion	GLYCEROL
2	IOD	15	Ligand/Ion	IODIDE ION
3	K	4	Ligand/Ion	POTASSIUM ION
4	MSE	16	Mod. Amino Acid	SELENOMETHIONINE
5	NAP	4	Ligand/Ion	NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
6	PGE	1	Ligand/Ion	TRIETHYLENE GLYCOL

Asymmetric Unit (28, 28)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ARG A:115	BINDING SITE FOR RESIDUE IOD A 501
02	AC2	SOFTWARE	ARG A:87 , ARG D:87	BINDING SITE FOR RESIDUE IOD A 502
03	AC3	SOFTWARE	ASN A:177 , ARG D:87	BINDING SITE FOR RESIDUE IOD D 503
04	AC4	SOFTWARE	THR D:239 , GLU D:240 , GOL D:408	BINDING SITE FOR RESIDUE IOD D 505
05	AC5	SOFTWARE	VAL D:206	BINDING SITE FOR RESIDUE IOD D 507
06	AC6	SOFTWARE	ASN B:177 , ARG C:87 , GLN C:106 , ARG C:172	BINDING SITE FOR RESIDUE IOD C 509
07	AC7	SOFTWARE	ARG B:87 , ARG B:172	BINDING SITE FOR RESIDUE IOD B 510
08	AC8	SOFTWARE	HIS B:98 , HIS C:98	BINDING SITE FOR RESIDUE IOD C 511
09	AC9	SOFTWARE	HIS A:98 , HOH A:800	BINDING SITE FOR RESIDUE IOD D 512
10	BC1	SOFTWARE	HOH B:690	BINDING SITE FOR RESIDUE IOD C 513
11	BC2	SOFTWARE	ASP A:205	BINDING SITE FOR RESIDUE IOD D 514
12	BC3	SOFTWARE	GLY A:121 , VAL A:206	BINDING SITE FOR RESIDUE IOD A 515
13	BC4	SOFTWARE	NAP A:300 , NAP B:300 , HOH B:628	BINDING SITE FOR RESIDUE K C 601
14	BC5	SOFTWARE	NAP A:300 , NAP B:300	BINDING SITE FOR RESIDUE K D 602
15	BC6	SOFTWARE	NAP C:300 , NAP D:300 , HOH D:687	BINDING SITE FOR RESIDUE K A 603
16	BC7	SOFTWARE	HOH C:610 , NAP D:300	BINDING SITE FOR RESIDUE K B 604
17	BC8	SOFTWARE	TYR A:101 , SER A:102 , GLN A:103 , SER A:105 , HOH A:779 , HOH A:787 , HOH A:800 , HOH A:806 , NAP B:300 , SER C:71 , GLU C:74 , HIS C:98 , ASN C:188 , ARG C:190 , HIS C:194 , K C:601 , ARG D:95 , HIS D:96 , ARG D:97 , HIS D:98 , HIS D:194 , ARG D:199 , K D:602	BINDING SITE FOR RESIDUE NAP A 300
18	BC9	SOFTWARE	NAP A:300 , HOH A:779 , HOH A:806 , GLN B:103 , SER B:105 , HOH B:628 , HOH B:683 , ARG C:95 , HIS C:96 , ARG C:97 , HIS C:194 , ARG C:199 , K C:601 , SER D:71 , GLU D:74 , HIS D:98 , ASN D:188 , ARG D:190 , HIS D:194 , K D:602 , HOH D:634 , HOH D:676	BINDING SITE FOR RESIDUE NAP B 300
19	CC1	SOFTWARE	SER A:71 , GLU A:74 , HIS A:98 , ASN A:188 , ARG A:190 , HIS A:194 , K A:603 , PGE A:701 , HOH A:785 , ARG B:95 , HIS B:96 , ARG B:97 , HIS B:194 , ARG B:199 , TYR C:101 , SER C:102 , GLN C:103 , SER C:105 , HOH C:610 , HOH C:620 , HOH C:635 , HOH C:683 , HOH C:684 , NAP D:300 , HOH D:642	BINDING SITE FOR RESIDUE NAP C 300
20	CC2	SOFTWARE	TYR A:44 , GLY A:68 , HIS A:69 , PHE A:70 , SER A:71 , HOH A:810 , SER C:105 , NAP C:300	BINDING SITE FOR RESIDUE PGE A 701
21	CC3	SOFTWARE	ARG A:95 , HIS A:96 , ARG A:97 , HIS A:98 , HIS A:194 , ARG A:199 , K A:603 , SER B:71 , GLU B:74 , HIS B:98 , ASN B:188 , ARG B:190 , HIS B:194 , K B:604 , HOH B:611 , HOH B:680 , NAP C:300 , HOH C:635 , TYR D:101 , SER D:102 , GLN D:103 , SER D:105 , HOH D:624 , HOH D:642 , HOH D:687	BINDING SITE FOR RESIDUE NAP D 300
22	CC4	SOFTWARE	LYS A:14 , THR A:15 , GLY A:32 , SER A:77 , TYR A:189 , VAL A:222 , HOH A:766	BINDING SITE FOR RESIDUE GOL A 401
23	CC5	SOFTWARE	LYS B:14 , THR B:15 , GLY B:31 , GLY B:32 , VAL B:78 , TYR B:189 , VAL B:222 , HOH B:674	BINDING SITE FOR RESIDUE GOL B 402
24	CC6	SOFTWARE	LYS C:14 , THR C:15 , GLY C:32 , SER C:77 , TYR C:189 , VAL C:222	BINDING SITE FOR RESIDUE GOL C 403
25	CC7	SOFTWARE	LYS D:14 , THR D:15 , GLY D:32 , SER D:77 , VAL D:78 , TYR D:189 , VAL D:222	BINDING SITE FOR RESIDUE GOL D 404
26	CC8	SOFTWARE	TYR B:81 , ARG B:182 , ASP D:22 , VAL D:23 , PRO D:24 , GLN D:45 , TRP D:47	BINDING SITE FOR RESIDUE GOL D 405
27	CC9	SOFTWARE	ILE C:213 , GLU C:240 , HOH C:658 , HOH C:659	BINDING SITE FOR RESIDUE GOL C 407
28	DC1	SOFTWARE	ARG D:210 , THR D:239 , GLU D:240 , IOD D:505 , HOH D:640	BINDING SITE FOR RESIDUE GOL D 408

(no "SS Bond" information available for 2GQ2)

(no "Cis Peptide Bond" information available for 2GQ2)

(no "SAP(SNP)/Variant" information available for 2GQ2)

Asymmetric/Biological Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	THYX	PS51331	Flavin-dependent thymidylate synthase (thyX) domain profile.	THYX_MYCTO	7-233	4	A:7-233 B:7-233 C:7-233 D:7-233
1	THYX	PS51331		THYX_MYCTU	7-233	4	A:7-233 B:7-233 C:7-233 D:7-233

(no "Exon" information available for 2GQ2)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:242
 aligned with THYX_MYCTO | P9WG56 from UniProtKB/Swiss-Prot  Length:250

    Alignment length:245
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241     
           THYX_MYCTO     2 AETAPLRVQLIAKTDFLAPPDVPWTTDADGGPALVEFAGRACYQSWSKPNPKTATNAGYLRHIIDVGHFSVLEHASVSFYITGISRSCTHELIRHRHFSYSQLSQRYVPEKDSRVVVPPGMEDDADLRHILTEAADAARATYSELLAKLEAKFADQPNAILRRKQARQAARAVLPNATETRIVVTGNYRAWRHFIAMRASEHADVEIRRLAIECLRQLAAVAPAVFADFEVTTLADGTEVATSPL 246
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee...eeeeeeeeee............hhhhhhhhhhhhhh.........---hhhhhhhhhhhh.hhhhhhh.eeeeeeeeeehhhhhhhh....eeeee...........ee..hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh....eeeeeeeeehhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh..eeee.....eeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----THYX  PDB: A:7-233 UniProt: 7-233                                                                                                                                                                                                  ------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gq2 A   2 AETAPLRVQLIAKTDFLAPPDVPWTTDADGGPALVEFAGRACYQSWSKPNP---TNAGYLRHImDVGHFSVLEHASVSFYITGISRSCTHELIRHRHFSYSQLSQRYVPEKDSRVVVPPGmEDDADLRHILTEAADAARATYSELLAKLEAKFADQPNAILRRKQARQAARAVmPNATETRIVVTGNYRAWRHFIAmRASEHADVEIRRLAIECLRQLAAVAPAVFADFEVTTLADGTEVATSPL 246
                                    11        21        31        41        51|   |   61   |    71        81        91       101       111       121|      131       141       151       161       171   |   181       191      |201       211       221       231       241     
                                                                             52  56       65-MSE                                                  122-MSE                                              175-MSE                198-MSE

Chain A from PDB  Type:PROTEIN  Length:242
 aligned with THYX_MYCTU | P9WG57 from UniProtKB/Swiss-Prot  Length:250

    Alignment length:245
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241     
           THYX_MYCTU     2 AETAPLRVQLIAKTDFLAPPDVPWTTDADGGPALVEFAGRACYQSWSKPNPKTATNAGYLRHIIDVGHFSVLEHASVSFYITGISRSCTHELIRHRHFSYSQLSQRYVPEKDSRVVVPPGMEDDADLRHILTEAADAARATYSELLAKLEAKFADQPNAILRRKQARQAARAVLPNATETRIVVTGNYRAWRHFIAMRASEHADVEIRRLAIECLRQLAAVAPAVFADFEVTTLADGTEVATSPL 246
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee...eeeeeeeeee............hhhhhhhhhhhhhh.........---hhhhhhhhhhhh.hhhhhhh.eeeeeeeeeehhhhhhhh....eeeee...........ee..hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh....eeeeeeeeehhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh..eeee.....eeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -----THYX  PDB: A:7-233 UniProt: 7-233                                                                                                                                                                                                  ------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gq2 A   2 AETAPLRVQLIAKTDFLAPPDVPWTTDADGGPALVEFAGRACYQSWSKPNP---TNAGYLRHImDVGHFSVLEHASVSFYITGISRSCTHELIRHRHFSYSQLSQRYVPEKDSRVVVPPGmEDDADLRHILTEAADAARATYSELLAKLEAKFADQPNAILRRKQARQAARAVmPNATETRIVVTGNYRAWRHFIAmRASEHADVEIRRLAIECLRQLAAVAPAVFADFEVTTLADGTEVATSPL 246
                                    11        21        31        41        51|   |   61   |    71        81        91       101       111       121|      131       141       151       161       171   |   181       191      |201       211       221       231       241     
                                                                             52  56       65-MSE                                                  122-MSE                                              175-MSE                198-MSE

Chain B from PDB  Type:PROTEIN  Length:226
 aligned with THYX_MYCTO | P9WG56 from UniProtKB/Swiss-Prot  Length:250

    Alignment length:243
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242   
           THYX_MYCTO     3 ETAPLRVQLIAKTDFLAPPDVPWTTDADGGPALVEFAGRACYQSWSKPNPKTATNAGYLRHIIDVGHFSVLEHASVSFYITGISRSCTHELIRHRHFSYSQLSQRYVPEKDSRVVVPPGMEDDADLRHILTEAADAARATYSELLAKLEAKFADQPNAILRRKQARQAARAVLPNATETRIVVTGNYRAWRHFIAMRASEHADVEIRRLAIECLRQLAAVAPAVFADFEVTTLADGTEVATSP 245
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeee............hhhhhhhhhhhhhh......--....hhhhhhhhhhhh.hhhhhhh.eeeeeeeeeehhhhhhhh....eeeee.......---.....hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh------------hhhhhhhhhhh....eeeeeeeeehhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh..eeee.....eeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----THYX  PDB: B:7-233 UniProt: 7-233                                                                                                                                                                                                  ------------ PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gq2 B   3 ETAPLRVQLIAKTDFLAPPDVPWTTDADGGPALVEFAGRACYQSWSK--PKTATNAGYLRHImDVGHFSVLEHASVSFYITGISRSCTHELIRHRHFSYSQLSQRYVP---SRVVVPPGmEDDADLRHILTEAADAARATYSELLAKLEA------------KQARQAARAVmPNATETRIVVTGNYRAWRHFIAmRASEHADVEIRRLAIECLRQLAAVAPAVFADFEVTTLADGTEVATSP 245
                                    12        22        32        42      | 52        62  |     72        82        92       102       | - |     122       132       142       152         -  |    172  |    182       192     | 202       212       222       232       242   
                                                                         49 52           65-MSE                                      110 114     122-MSE                       152          165       175-MSE                198-MSE

Chain B from PDB  Type:PROTEIN  Length:226
 aligned with THYX_MYCTU | P9WG57 from UniProtKB/Swiss-Prot  Length:250

    Alignment length:243
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242   
           THYX_MYCTU     3 ETAPLRVQLIAKTDFLAPPDVPWTTDADGGPALVEFAGRACYQSWSKPNPKTATNAGYLRHIIDVGHFSVLEHASVSFYITGISRSCTHELIRHRHFSYSQLSQRYVPEKDSRVVVPPGMEDDADLRHILTEAADAARATYSELLAKLEAKFADQPNAILRRKQARQAARAVLPNATETRIVVTGNYRAWRHFIAMRASEHADVEIRRLAIECLRQLAAVAPAVFADFEVTTLADGTEVATSP 245
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeee............hhhhhhhhhhhhhh......--....hhhhhhhhhhhh.hhhhhhh.eeeeeeeeeehhhhhhhh....eeeee.......---.....hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh------------hhhhhhhhhhh....eeeeeeeeehhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh..eeee.....eeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ----THYX  PDB: B:7-233 UniProt: 7-233                                                                                                                                                                                                  ------------ PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gq2 B   3 ETAPLRVQLIAKTDFLAPPDVPWTTDADGGPALVEFAGRACYQSWSK--PKTATNAGYLRHImDVGHFSVLEHASVSFYITGISRSCTHELIRHRHFSYSQLSQRYVP---SRVVVPPGmEDDADLRHILTEAADAARATYSELLAKLEA------------KQARQAARAVmPNATETRIVVTGNYRAWRHFIAmRASEHADVEIRRLAIECLRQLAAVAPAVFADFEVTTLADGTEVATSP 245
                                    12        22        32        42      | 52        62  |     72        82        92       102       | - |     122       132       142       152         -  |    172  |    182       192     | 202       212       222       232       242   
                                                                         49 52           65-MSE                                      110 114     122-MSE                       152          165       175-MSE                198-MSE

Chain C from PDB  Type:PROTEIN  Length:225
 aligned with THYX_MYCTO | P9WG56 from UniProtKB/Swiss-Prot  Length:250

    Alignment length:244
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243    
           THYX_MYCTO     4 TAPLRVQLIAKTDFLAPPDVPWTTDADGGPALVEFAGRACYQSWSKPNPKTATNAGYLRHIIDVGHFSVLEHASVSFYITGISRSCTHELIRHRHFSYSQLSQRYVPEKDSRVVVPPGMEDDADLRHILTEAADAARATYSELLAKLEAKFADQPNAILRRKQARQAARAVLPNATETRIVVTGNYRAWRHFIAMRASEHADVEIRRLAIECLRQLAAVAPAVFADFEVTTLADGTEVATSPLA 247
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeee............hhhhhhhhhhhhhh.....-----..hhhhhhhhhhhh.hhhhhhh.eeeeeeeeeehhhhhhhh....eeeee.......---...........hhhhhhhhhhhhhhhhhhhhhhhhhhhh-----------hhhhhhhhhhhh....eeeeeeeeehhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh..eeee.....eeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---THYX  PDB: C:7-233 UniProt: 7-233                                                                                                                                                                                                  -------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gq2 C   4 TAPLRVQLIAKTDFLAPPDVPWTTDADGGPALVEFAGRACYQSWS-----TATNAGYLRHImDVGHFSVLEHASVSFYITGISRSCTHELIRHRHFSYSQLSQRYVP---SRVVVPPGmEDDADLRHILTEAADAARATYSELLAKLEA-----------RKQARQAARAVmPNATETRIVVTGNYRAWRHFIAmRASEHADVEIRRLAIECLRQLAAVAPAVFADFEVTTLADGTEVATSPLA 247
                                    13        23        33        43    |    -|       63 |      73        83        93       103      |  -|      123       133       143        |-         -|      173 |     183       193    |  203       213       223       233       243    
                                                                       48    54         65-MSE                                      110 114     122-MSE                       152         164        175-MSE                198-MSE

Chain C from PDB  Type:PROTEIN  Length:225
 aligned with THYX_MYCTU | P9WG57 from UniProtKB/Swiss-Prot  Length:250

    Alignment length:244
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243    
           THYX_MYCTU     4 TAPLRVQLIAKTDFLAPPDVPWTTDADGGPALVEFAGRACYQSWSKPNPKTATNAGYLRHIIDVGHFSVLEHASVSFYITGISRSCTHELIRHRHFSYSQLSQRYVPEKDSRVVVPPGMEDDADLRHILTEAADAARATYSELLAKLEAKFADQPNAILRRKQARQAARAVLPNATETRIVVTGNYRAWRHFIAMRASEHADVEIRRLAIECLRQLAAVAPAVFADFEVTTLADGTEVATSPLA 247
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeee............hhhhhhhhhhhhhh.....-----..hhhhhhhhhhhh.hhhhhhh.eeeeeeeeeehhhhhhhh....eeeee.......---...........hhhhhhhhhhhhhhhhhhhhhhhhhhhh-----------hhhhhhhhhhhh....eeeeeeeeehhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh..eeee.....eeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ---THYX  PDB: C:7-233 UniProt: 7-233                                                                                                                                                                                                  -------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gq2 C   4 TAPLRVQLIAKTDFLAPPDVPWTTDADGGPALVEFAGRACYQSWS-----TATNAGYLRHImDVGHFSVLEHASVSFYITGISRSCTHELIRHRHFSYSQLSQRYVP---SRVVVPPGmEDDADLRHILTEAADAARATYSELLAKLEA-----------RKQARQAARAVmPNATETRIVVTGNYRAWRHFIAmRASEHADVEIRRLAIECLRQLAAVAPAVFADFEVTTLADGTEVATSPLA 247
                                    13        23        33        43    |    -|       63 |      73        83        93       103      |  -|      123       133       143        |-         -|      173 |     183       193    |  203       213       223       233       243    
                                                                       48    54         65-MSE                                      110 114     122-MSE                       152         164        175-MSE                198-MSE

Chain D from PDB  Type:PROTEIN  Length:226
 aligned with THYX_MYCTO | P9WG56 from UniProtKB/Swiss-Prot  Length:250

    Alignment length:241
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243 
           THYX_MYCTO     4 TAPLRVQLIAKTDFLAPPDVPWTTDADGGPALVEFAGRACYQSWSKPNPKTATNAGYLRHIIDVGHFSVLEHASVSFYITGISRSCTHELIRHRHFSYSQLSQRYVPEKDSRVVVPPGMEDDADLRHILTEAADAARATYSELLAKLEAKFADQPNAILRRKQARQAARAVLPNATETRIVVTGNYRAWRHFIAMRASEHADVEIRRLAIECLRQLAAVAPAVFADFEVTTLADGTEVATS 244
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeee............hhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhh.hhhhhhh.eeeeeeeeeehhhhhhhhh....eeee.....------....hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh---------...hhhhhhhhhhh....eeeeeeeeehhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh..eeee.....eeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---THYX  PDB: D:7-233 UniProt: 7-233                                                                                                                                                                                                  ----------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gq2 D   4 TAPLRVQLIAKTDFLAPPDVPWTTDADGGPALVEFAGRACYQSWSKPNPKTATNAGYLRHImDVGHFSVLEHASVSFYITGISRSCTHELIRHRHFSYSQLSQRY------RVVVPPGmEDDADLRHILTEAADAARATYSELLAKLEA---------LRRKQARQAARAVmPNATETRIVVTGNYRAWRHFIAmRASEHADVEIRRLAIECLRQLAAVAPAVFADFEVTTLADGTEVATS 244
                                    13        23        33        43        53        63 |      73        83        93       103    |    - |     123       133       143        |-       163       173 |     183       193    |  203       213       223       233       243 
                                                                                        65-MSE                                    108    115      |                           152       162          175-MSE                198-MSE                                          
                                                                                                                                                122-MSE

Chain D from PDB  Type:PROTEIN  Length:226
 aligned with THYX_MYCTU | P9WG57 from UniProtKB/Swiss-Prot  Length:250

    Alignment length:241
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243 
           THYX_MYCTU     4 TAPLRVQLIAKTDFLAPPDVPWTTDADGGPALVEFAGRACYQSWSKPNPKTATNAGYLRHIIDVGHFSVLEHASVSFYITGISRSCTHELIRHRHFSYSQLSQRYVPEKDSRVVVPPGMEDDADLRHILTEAADAARATYSELLAKLEAKFADQPNAILRRKQARQAARAVLPNATETRIVVTGNYRAWRHFIAMRASEHADVEIRRLAIECLRQLAAVAPAVFADFEVTTLADGTEVATS 244
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeee............hhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhh.hhhhhhh.eeeeeeeeeehhhhhhhhh....eeee.....------....hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh---------...hhhhhhhhhhh....eeeeeeeeehhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh..eeee.....eeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ---THYX  PDB: D:7-233 UniProt: 7-233                                                                                                                                                                                                  ----------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gq2 D   4 TAPLRVQLIAKTDFLAPPDVPWTTDADGGPALVEFAGRACYQSWSKPNPKTATNAGYLRHImDVGHFSVLEHASVSFYITGISRSCTHELIRHRHFSYSQLSQRY------RVVVPPGmEDDADLRHILTEAADAARATYSELLAKLEA---------LRRKQARQAARAVmPNATETRIVVTGNYRAWRHFIAmRASEHADVEIRRLAIECLRQLAAVAPAVFADFEVTTLADGTEVATS 244
                                    13        23        33        43        53        63 |      73        83        93       103    |    - |     123       133       143        |-       163       173 |     183       193    |  203       213       223       233       243 
                                                                                        65-MSE                                    108    115      |                           152       162          175-MSE                198-MSE                                          
                                                                                                                                                122-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 2GQ2)

(no "CATH Domain" information available for 2GQ2)

(no "Pfam Domain" information available for 2GQ2)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C,D (THYX_MYCTO | P9WG56)

molecular function
	GO:0050660	flavin adenine dinucleotide binding	Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
	GO:0008168	methyltransferase activity	Catalysis of the transfer of a methyl group to an acceptor molecule.
	GO:0050797	thymidylate synthase (FAD) activity	Catalysis of the reaction: 5,10-methylenetetrahydrofolate + dUMP + NADPH + H+ = dTMP + tetrahydrofolate + NADP+.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0006231	dTMP biosynthetic process	The chemical reactions and pathways resulting in the formation of dTMP, deoxyribosylthymine monophosphate (2'-deoxyribosylthymine 5'-phosphate).
	GO:0032259	methylation	The process in which a methyl group is covalently attached to a molecule.
	GO:0009165	nucleotide biosynthetic process	The chemical reactions and pathways resulting in the formation of nucleotides, any nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic-nucleotides (nucleoside cyclic phosphates).

Chain A,B,C,D (THYX_MYCTU | P9WG57)

molecular function
	GO:0070402	NADPH binding	Interacting selectively and non-covalently with the reduced form, NADPH, of nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions.
	GO:0050660	flavin adenine dinucleotide binding	Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
	GO:0008168	methyltransferase activity	Catalysis of the transfer of a methyl group to an acceptor molecule.
	GO:0050797	thymidylate synthase (FAD) activity	Catalysis of the reaction: 5,10-methylenetetrahydrofolate + dUMP + NADPH + H+ = dTMP + tetrahydrofolate + NADP+.
	GO:0004799	thymidylate synthase activity	Catalysis of the reaction: 5,10-methylenetetrahydrofolate + dUMP = 7,8-dihydrofolate + thymidylate.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0006231	dTMP biosynthetic process	The chemical reactions and pathways resulting in the formation of dTMP, deoxyribosylthymine monophosphate (2'-deoxyribosylthymine 5'-phosphate).
	GO:0040007	growth	The increase in size or mass of an entire organism, a part of an organism or a cell.
	GO:0032259	methylation	The process in which a methyl group is covalently attached to a molecule.
	GO:0009165	nucleotide biosynthetic process	The chemical reactions and pathways resulting in the formation of nucleotides, any nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic-nucleotides (nucleoside cyclic phosphates).

Asymmetric/Biological Unit
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2gq2)

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	2gq2
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	THYX_MYCTO \| P9WG56
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	THYX_MYCTU \| P9WG57
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	2.1.1.148
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	THYX_MYCTO \| P9WG56
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UniProtKB/Swiss-Prot
	THYX_MYCTO \| P9WG56	:	2af6 3gwc 3hzg
	THYX_MYCTU \| P9WG57	:	2af6 3gwc 3hzg

Description

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Ligands, Modified Residues, Ions (6, 47)

Sites (28, 28)

SS Bonds (0, 0)

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