2GPJ - JenaLib

Title :   CRYSTAL STRUCTURE OF A SIDEROPHORE-INTERACTING PROTEIN (SPUTCN32_0076) FROM SHEWANELLA PUTREFACIENS CN-32 AT 2.20 A RESOLUTION

Authors :   Joint Center For Structural Genomics (Jcsg)

Date :   17 Apr 06 (Deposition) - 13 Jun 06 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.20

Chains :   Asym./Biol. Unit : A

Keywords :   Siderophore-Interacting Protein, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Fad-Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Siderophore-Interacting Protein (Zp_00813641. 1) From Shewanella Putrefaciens Cn-32 At 2. 20 Resolution
To Be Published
PubMed: search

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (6, 22)

Sites (18, 18)

Asymmetric Unit (18, 18)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	HIS A:159	BINDING SITE FOR RESIDUE CA A 252
02	AC2	SOFTWARE	HIS A:208 , HIS A:213 , ACY A:514	BINDING SITE FOR RESIDUE CA A 253
03	AC3	SOFTWARE	ARG A:206 , LYS A:210	BINDING SITE FOR RESIDUE CL A 254
04	AC4	SOFTWARE	ARG A:58 , THR A:59 , TYR A:60 , THR A:61 , ASP A:73 , VAL A:75 , HIS A:77 , THR A:79 , GLY A:81 , PRO A:82 , ALA A:83 , SER A:84 , THR A:121 , PRO A:124 , TYR A:225 , TRP A:226 , LYS A:227 , GLY A:229 , CYS A:230 , ASN A:231 , GLU A:232 , EDO A:505 , ACY A:509 , ACY A:510 , HOH A:516 , HOH A:517 , HOH A:518 , HOH A:543 , HOH A:549 , HOH A:552 , HOH A:579	BINDING SITE FOR RESIDUE FAD A 500
05	AC5	SOFTWARE	ASP A:38	BINDING SITE FOR RESIDUE EDO A 501
06	AC6	SOFTWARE	MSE A:22 , ARG A:24 , ARG A:63 , ASP A:73 , SER A:127 , GLN A:152 , LEU A:154	BINDING SITE FOR RESIDUE EDO A 502
07	AC7	SOFTWARE	VAL A:155 , HIS A:156 , GLU A:158	BINDING SITE FOR RESIDUE EDO A 503
08	AC8	SOFTWARE	LEU A:56 , MSE A:57 , ARG A:58 , HOH A:555	BINDING SITE FOR RESIDUE EDO A 504
09	AC9	SOFTWARE	HIS A:77 , ASP A:78 , PRO A:168 , ALA A:170 , FAD A:500	BINDING SITE FOR RESIDUE EDO A 505
10	BC1	SOFTWARE	GLU A:110 , ASN A:200 , LYS A:227 , ILE A:228	BINDING SITE FOR RESIDUE EDO A 506
11	BC2	SOFTWARE	ASN A:108 , GLU A:110 , LYS A:227 , CYS A:230	BINDING SITE FOR RESIDUE EDO A 507
12	BC3	SOFTWARE	LEU A:47 , PRO A:49 , LEU A:95 , GLN A:97	BINDING SITE FOR RESIDUE EDO A 508
13	BC4	SOFTWARE	ASP A:119 , MSE A:120 , THR A:121 , FAD A:500	BINDING SITE FOR RESIDUE ACY A 509
14	BC5	SOFTWARE	LYS A:45 , GLU A:53 , THR A:59 , GLU A:232 , HIS A:235 , LYS A:236 , LYS A:239 , FAD A:500 , ACY A:512 , HOH A:516	BINDING SITE FOR RESIDUE ACY A 510
15	BC6	SOFTWARE	SER A:147 , GLU A:148 , ALA A:149 , ARG A:180 , GLN A:183 , LEU A:184	BINDING SITE FOR RESIDUE ACY A 511
16	BC7	SOFTWARE	GLU A:53 , LYS A:236 , GLN A:240 , GLU A:243 , ACY A:510	BINDING SITE FOR RESIDUE ACY A 512
17	BC8	SOFTWARE	ASP A:112 , VAL A:138 , ALA A:188	BINDING SITE FOR RESIDUE ACY A 513
18	BC9	SOFTWARE	ILE A:181 , LEU A:184 , HIS A:208 , CA A:253	BINDING SITE FOR RESIDUE ACY A 514

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:244
 aligned with A4Y1H9_SHEPC | A4Y1H9 from UniProtKB/TrEMBL  Length:251

    Alignment length:244
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244    
         A4Y1H9_SHEPC     5 PAPRELEVIRSTYITPHMLRITLGGAGLAGFPADQESAYIKLLFPQAGERPLMRTYTIRQQRDDEIDVDFVLHDTDGPASSWAKTAQVGELIQIGGPGLKKLINFEADWFLLAGDMTALPAISVNLAKLPNNAVGYAVIEVLSEADIQPLVHPEHVELHWVINPEADPEGRPLVERIAQLPWLAGEPAVWIACEFNSMRALRRHFKQAHALPKSHFYTSSYWKIGCNEGEHKLVKQEDEQLENG 248
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2gpjA01 A:5-104 Translation factors                                                                 2gpjA02 A:105-248 Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module                                                            CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeeeee..eeeeeee.hhhh.........eeeeee.......eeeeee..eee..eeeeeee.....hhhhhhhhhh....eeeeeeee..........eeeeeee..hhhhhhhhhhhh....eeeeeeee.hhhhh.......eeeeeeee.......hhhhhhhhh........eeeeeeeehhhhhhhhhhhhhhh..hhh.eeeeeee....hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gpj A   5 PAPRELEVIRSTYITPHmLRITLGGAGLAGFPADQESAYIKLLFPQAGERPLmRTYTIRQQRDDEIDVDFVLHDTDGPASSWAKTAQVGELIQIGGPGLKKLINFEADWFLLAGDmTALPAISVNLAKLPNNAVGYAVIEVLSEADIQPLVHPEHVELHWVINPEADPEGRPLVERIAQLPWLAGEPAVWIACEFNSmRALRRHFKQAHALPKSHFYTSSYWKIGCNEGEHKLVKQEDEQLENG 248
                                    14       |24        34        44        54  |     64        74        84        94       104       114     | 124       134       144       154       164       174       184       194       204       214       224       234       244    
                                            22-MSE                             57-MSE                                                        120-MSE                                                                           202-MSE

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (2, 2)

Pfam Domains (0, 0)

Gene Ontology (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (A4Y1H9_SHEPC | A4Y1H9)

molecular function
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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	Cis Peptide Bonds
		Gly A:100 - Pro A:101	[ RasMol ]

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