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(-) Description

Title :  SOLUTION STRUCTURE OF MURINE P22HBP
 
Authors :  B. F. Volkman, J. S. Dias, B. J. Goodfellow, F. C. Peterson, Center For Eukaryotic Structural Genomics (Cesg)
Date :  14 Apr 06  (Deposition) - 09 May 06  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  P22Hbp, Heme Binding, Structural Genomics, Protein Structure Initiative, Psi, Center For Eukaryotic Structural Genomics, Cesg, Heme Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. S. Dias, A. L. Macedo, G. C. Ferreira, F. C. Peterson, B. F. Volkman, B. J. Goodfellow
The First Structure From The Soul/Hbp Family Of Heme-Binding Proteins, Murine P22Hbp.
J. Biol. Chem. V. 281 31553 2006
PubMed-ID: 16905545  |  Reference-DOI: 10.1074/JBC.M605988200
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HEME-BINDING PROTEIN 1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PNJ2
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: HEBP1, HBP
    Organism Common: HOUSE MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: P22HBP

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2GOV)

(-) Sites  (0, 0)

(no "Site" information available for 2GOV)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2GOV)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2GOV)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2GOV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2GOV)

(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:184
 aligned with HEBP1_MOUSE | Q9R257 from UniProtKB/Swiss-Prot  Length:190

    Alignment length:184
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186    
          HEBP1_MOUSE     7 NSLFGSVETWPWQVLSTGGKEDVSYEERACEGGKFATVEVTDKPVDEALREAMPKIMKYVGGTNDKGVGMGMTVPVSFALFPNEDGSLQKKLKVWFRIPNQFQGSPPAPSDESVKIEEREGITVYSTQFGGYAKEADYVAHATQLRTTLEGTPATYQGDVYYCAGYDPPMKPYGRRNEVWLVKA 190
               SCOP domains d2gova1 A:7-190 Heme-binding protein 1                                                                                                                                                   SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eeeee.......eeeee....eeeeeeee..hhhhhhhhhhhhhhhhhhh.............eeeeeee.....eeeeeeeee..hhhhhhh.........eeee....eeeeeeee...hhhhhhhhhhhhhhhh......eeeeeeeeee..........eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gov A   7 NSLFGSVETWPWQVLSTGGKEDVSYEERACEGGKFATVEVTDKPVDEALREAMPKIMKYVGGTNDKGVGMGMTVPVSFAVFPNEDGSLQKKLKVWFRIPNQFQGSPPAPSDESVKIEEREGITVYSTQFGGYAKEADYVAHATQLRTTLEGTPATYQGDVYYCAGYDPPMKPYGRRNEVWLVKA 190
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2GOV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2GOV)

(-) Gene Ontology  (6, 6)

NMR Structure(hide GO term definitions)
Chain A   (HEBP1_MOUSE | Q9R257)
molecular function
    GO:0020037    heme binding    Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
biological process
    GO:0042168    heme metabolic process    The chemical reactions and pathways involving heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

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 Related Entries

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        HEBP1_MOUSE | Q9R257: 2hva 4a1m

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