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(-) Description

Title :  THE BETA-PROPELLER DOMAIN OF THE TRILOBED PROTEASE FROM PYROCOCCUS FURIOSUS REVEALS AN OPEN VELCRO TOPOLOGY
 
Authors :  J. Bosch, T. Tamura, N. Tamura, W. Baumeister, L. -O. Essen
Date :  13 Apr 06  (Deposition) - 23 Jan 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Beta Propeller, Open Velcro, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Bosch, T. Tamura, N. Tamura, W. Baumeister, L. O. Essen
The Beta-Propeller Domain Of The Trilobed Protease From Pyrococcus Furiosus Reveals An Open Velcro Topology.
Acta Crystallogr. , Sect. D V. 63 179 2007
PubMed-ID: 17242511  |  Reference-DOI: 10.1107/S0907444906045471

(-) Compounds

Molecule 1 - TRILOBED PROTEASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: PYROCOCCUS FURIOSUS
    Organism Taxid: 2261

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2GOP)

(-) Sites  (0, 0)

(no "Site" information available for 2GOP)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2GOP)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2GOP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2GOP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2GOP)

(-) Exons   (0, 0)

(no "Exon" information available for 2GOP)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:320
 aligned with Q8U3Y3_PYRFU | Q8U3Y3 from UniProtKB/TrEMBL  Length:620

    Alignment length:338
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339        
         Q8U3Y3_PYRFU    10 TFAKFAYLSDPRTKGELVAYVLTKANLKDNKYENTIVIENLKNNARRFIENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKNIRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKPRFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEKVSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYDGKEVMGILDEVDRGVGQAKIKDGKVYFTLFEEGSVNLYIWDGEIKPIAKGRHWIMGFDVDEIVVYLKETATRLRELFTWDGEEKQLTDYNDPIFAKL 347
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeee..eeeeeeeeee....eeeeeeeeee.....eeeee..eeeee.....eeeeeeee....eeeeeeee....eeeeeeee.eeeeeee.....eeeeeee....---------....---------.eeeeeeee....eeeeeeeee...eeeee..eeeeeee...........eeeeeee..eeeeeeeee.eeeeee....eeeee...........eeeee....eee.......eeeeeeee..eeeeeeee..eeeeeee...eeeee....eeeeeee...eeeeee......eeeee...eee............ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gop A  10 TFAKFAYLSDPRTKGELVAYVLTKANLKDNKYENTIVIENLKNNARRFIENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKNIRSLEWNEDSRKLLIVGFKRRE---------VPAW---------EKTTFWIFDTESEEVIEEFEKPRFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEKVSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYDGKEVMGILDEVDRGVGQAKIKDGKVYFTLFEEGSVNLYIWDGEIKPIAKGRHWIMGFDVDEIVVYLKETATRLRELFTWDGEEKQLTDYNDPIFAKL 347
                                    19        29        39        49        59        69        79        89        99       109       119       | -       139|        -|      159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339        
                                                                                                                                               127       137  |       150                                                                                                                                                                                                     
                                                                                                                                                            140                                                                                                                                                                                                               


Chain B from PDB  Type:PROTEIN  Length:304
 aligned with Q8U3Y3_PYRFU | Q8U3Y3 from UniProtKB/TrEMBL  Length:620

    Alignment length:330
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342
         Q8U3Y3_PYRFU    13 KFAYLSDPRTKGELVAYVLTKANLKDNKYENTIVIENLKNNARRFIENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKNIRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKPRFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEKVSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYDGKEVMGILDEVDRGVGQAKIKDGKVYFTLFEEGSVNLYIWDGEIKPIAKGRHWIMGFDVDEIVVYLKETATRLRELFTWDGEEKQLTDYNDP 342
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeeee..eeeeeeee.---....eeeeeeee.....eeeee.eeeeee.....eeeeeeee....eeeeeeee.....eeeeeee.eeeeeee.....eeeeeee.-----------------------...eeeeeeee....eeeeeeeee...eeeee..eeeeeee...........eeeeeee..eeeeeeeee.eeeeee....eeeee...........eeeee....eee.......eeeeeeee..eeeeeeee..eeeeeee...eeeee....eeeeeee...eeeeee......eeeee...eee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2gop B  13 KFAYLSDPRTKGELVAYVLTKA---DNKYENTIVIENLKNNARRFIENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKNIRSLEWNEDSRKLLIVGFK-----------------------DGEKTTFWIFDTESEEVIEEFEKPRFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEKVSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYDGKEVMGILDEVDRGVGQAKIKDGKVYFTLFEEGSVNLYIWDGEIKPIAKGRHWIMGFDVDEIVVYLKETATRLRELFTWDGEEKQLTDYNDP 342
                                    22        32 |   |  42        52        62        72        82        92       102       112       122 |       -         -     | 152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342
                                                34  38                                                                                   124                     148
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2GOP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2GOP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2GOP)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (Q8U3Y3_PYRFU | Q8U3Y3)
molecular function
    GO:0008236    serine-type peptidase activity    Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
biological process
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.

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