2GO7 - JenaLib

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Biological Unit 6 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF A HYDROLASE FROM HALOACID DEHALOGENASE-LIKE FAMILY (SP_2064) FROM STREPTOCOCCUS PNEUMONIAE TIGR4 AT 2.10 A RESOLUTION

Authors :   Joint Center For Structural Genomics (Jcsg)

Date :   12 Apr 06 (Deposition) - 23 May 06 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.10

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)
Biol. Unit 5: A,B  (1x)
Biol. Unit 6: C,D  (1x)

Keywords :   Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of (Np_346487. 1) From Streptococcus Pneumoniae Tigr4 At 2. 10 A Resolution
To Be Published
PubMed: search

Molecule 1 - HYDROLASE, HALOACID DEHALOGENASE-LIKE FAMILY
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	NP_346487.1
	Organism Scientific	:	STREPTOCOCCUS PNEUMONIAE
	Organism Taxid	:	170187
	Strain	:	TIGR4

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D
Biological Unit 5 (1x)	:	A	B
Biological Unit 6 (1x)	:			C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 23)

No.	Name	Count	Type	Full Name
1	CL	14	Ligand/Ion	CHLORIDE ION
2	MG	4	Ligand/Ion	MAGNESIUM ION
3	MSE	5	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	MG	-1	Ligand/Ion	MAGNESIUM ION
3	MSE	1	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	MG	-1	Ligand/Ion	MAGNESIUM ION
3	MSE	1	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 3 (1, 2)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	MG	-1	Ligand/Ion	MAGNESIUM ION
3	MSE	2	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 4 (1, 1)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	MG	-1	Ligand/Ion	MAGNESIUM ION
3	MSE	1	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 5 (1, 2)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	MG	-1	Ligand/Ion	MAGNESIUM ION
3	MSE	2	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 6 (1, 3)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	MG	-1	Ligand/Ion	MAGNESIUM ION
3	MSE	3	Mod. Amino Acid	SELENOMETHIONINE

Asymmetric Unit (18, 18)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASP A:9 , ASP A:11 , ASP A:164 , HOH A:213 , HOH A:214 , HOH A:215	BINDING SITE FOR RESIDUE MG A 207
02	AC2	SOFTWARE	ASP B:9 , ASP B:11 , ASP B:164 , HOH B:210 , HOH B:211 , HOH B:212	BINDING SITE FOR RESIDUE MG B 207
03	AC3	SOFTWARE	ASP C:9 , ASP C:11 , ASP C:164 , HOH C:212 , HOH C:213 , HOH C:214	BINDING SITE FOR RESIDUE MG C 207
04	AC4	SOFTWARE	ASP D:9 , ASP D:11 , ASP D:164 , HOH D:211 , HOH D:212 , HOH D:213	BINDING SITE FOR RESIDUE MG D 207
05	AC5	SOFTWARE	GLY D:121 , VAL D:122 , GLU D:123 , SER D:124	BINDING SITE FOR RESIDUE CL D 208
06	AC6	SOFTWARE	GLY C:121 , GLU C:123 , SER C:124	BINDING SITE FOR RESIDUE CL C 208
07	AC7	SOFTWARE	GLY A:121 , VAL A:122 , GLU A:123 , SER A:124 , HOH A:341	BINDING SITE FOR RESIDUE CL A 208
08	AC8	SOFTWARE	ARG A:72	BINDING SITE FOR RESIDUE CL A 209
09	AC9	SOFTWARE	ARG A:138 , LYS A:139 , HOH A:335	BINDING SITE FOR RESIDUE CL A 210
10	BC1	SOFTWARE	ARG C:72	BINDING SITE FOR RESIDUE CL C 209
11	BC2	SOFTWARE	ARG D:72 , LEU D:76	BINDING SITE FOR RESIDUE CL D 209
12	BC3	SOFTWARE	GLY B:121 , VAL B:122 , GLU B:123 , SER B:124	BINDING SITE FOR RESIDUE CL B 208
13	BC4	SOFTWARE	ARG A:138 , ARG B:138	BINDING SITE FOR RESIDUE CL A 211
14	BC5	SOFTWARE	ARG C:138 , ARG D:138	BINDING SITE FOR RESIDUE CL C 210
15	BC6	SOFTWARE	ASP B:9 , LEU B:10 , ASP B:11 , THR B:107	BINDING SITE FOR RESIDUE CL B 209
16	BC7	SOFTWARE	ASP C:9 , LEU C:10 , ASP C:11 , THR C:107 , HIS C:108	BINDING SITE FOR RESIDUE CL C 211
17	BC8	SOFTWARE	ASP D:9 , LEU D:10 , ASP D:11 , THR D:107 , HIS D:108	BINDING SITE FOR RESIDUE CL D 210
18	BC9	SOFTWARE	ASP A:9 , LEU A:10 , ASP A:11 , THR A:107 , HIS A:108	BINDING SITE FOR RESIDUE CL A 212

(no "SS Bond" information available for 2GO7)

Asymmetric Unit

No.	Residues
1	Lys A:139	-	Pro A:140
2	Lys B:139	-	Pro B:140
3	Lys C:139	-	Pro C:140
4	Lys D:139	-	Pro D:140

(no "SAP(SNP)/Variant" information available for 2GO7)

(no "PROSITE Motif" information available for 2GO7)

(no "Exon" information available for 2GO7)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:204
 aligned with A0A0H2URV7_S | A0A0H2URV7 from UniProtKB/TrEMBL  Length:206

    Alignment length:204
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202    
         A0A0H2URV7_S     3 KTAFIWDLDGTLLDSYEAILSGIEETFAQFSIPYDKEKVREFIFKYSVQDLLVRVAEDRNLDVEVLNQVRAQSLAEKNAQVVLMPGAREVLAWADESGIQQFIYTHKGNNAFTILKDLGVESYFTEILTSQSGFVRKPSPEAATYLLDKYQLNSDNTYYIGDRTLDVEFAQNSGIQSINFLESTYEGNHRIQALADISRIFETK 206
               SCOP domains d2go7a1 A:3-206 Hypothetical protein SP2064                                                                                                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeee......eehhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhh..eeeee....hhhhhhhhhh.hhh.eeeeehhhhh......hhhhhhhhhhhh.hhh.eeeee.hhhhhhhhhhhh.eeee........eee....hhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2go7 A   3 KTAFIWDLDGTLLDSYEAILSGIEETFAQFSIPYDKEKVREFIFKYSVQDLLVRVAEDRNLDVEVLNQVRAQSLAEKNAQVVLmPGAREVLAWADESGIQQFIYTHKGNNAFTILKDLGVESYFTEILTSQSGFVRKPSPEAATYLLDKYQLNSDNTYYIGDRTLDVEFAQNSGIQSINFLESTYEGNHRIQALADISRIFETK 206
                                    12        22        32        42        52        62        72        82   |    92       102       112       122       132       142       152       162       172       182       192       202    
                                                                                                              86-MSE

Chain B from PDB  Type:PROTEIN  Length:202
 aligned with A0A0H2URV7_S | A0A0H2URV7 from UniProtKB/TrEMBL  Length:206

    Alignment length:202
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202  
         A0A0H2URV7_S     3 KTAFIWDLDGTLLDSYEAILSGIEETFAQFSIPYDKEKVREFIFKYSVQDLLVRVAEDRNLDVEVLNQVRAQSLAEKNAQVVLMPGAREVLAWADESGIQQFIYTHKGNNAFTILKDLGVESYFTEILTSQSGFVRKPSPEAATYLLDKYQLNSDNTYYIGDRTLDVEFAQNSGIQSINFLESTYEGNHRIQALADISRIFE 204
               SCOP domains d2go7b_ B: Hypothetical protein SP2064                                                                                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee......eehhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhh.eeeee....hhhhhhhhhh.hhhhh.eeehhhhh......hhhhhhhhhhh..hhh.eeeee.hhhhhhhhhhhh.eeee........eee....hhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2go7 B   3 KTAFIWDLDGTLLDSYEAILSGIEETFAQFSIPYDKEKVREFIFKYSVQDLLVRVAEDRNLDVEVLNQVRAQSLAEKNAQVVLmPGAREVLAWADESGIQQFIYTHKGNNAFTILKDLGVESYFTEILTSQSGFVRKPSPEAATYLLDKYQLNSDNTYYIGDRTLDVEFAQNSGIQSINFLESTYEGNHRIQALADISRIFE 204
                                    12        22        32        42        52        62        72        82   |    92       102       112       122       132       142       152       162       172       182       192       202  
                                                                                                              86-MSE

Chain C from PDB  Type:PROTEIN  Length:205
 aligned with A0A0H2URV7_S | A0A0H2URV7 from UniProtKB/TrEMBL  Length:206

    Alignment length:205
                             1                                                                                                                                                                                                           
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199     
         A0A0H2URV7_S     - -MQKTAFIWDLDGTLLDSYEAILSGIEETFAQFSIPYDKEKVREFIFKYSVQDLLVRVAEDRNLDVEVLNQVRAQSLAEKNAQVVLMPGAREVLAWADESGIQQFIYTHKGNNAFTILKDLGVESYFTEILTSQSGFVRKPSPEAATYLLDKYQLNSDNTYYIGDRTLDVEFAQNSGIQSINFLESTYEGNHRIQALADISRIFE 204
               SCOP domains d2go7c_ C: Hypothetical protein SP2064                                                                                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee......eehhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhh..eeeee....hhhhhhhhhh.hhhhh.eeehhhhh......hhhhhhhhhhh..hhh.eeeee.hhhhhhhhhhhh.eeee........eee....hhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2go7 C   0 GmQKTAFIWDLDGTLLDSYEAILSGIEETFAQFSIPYDKEKVREFIFKYSVQDLLVRVAEDRNLDVEVLNQVRAQSLAEKNAQVVLmPGAREVLAWADESGIQQFIYTHKGNNAFTILKDLGVESYFTEILTSQSGFVRKPSPEAATYLLDKYQLNSDNTYYIGDRTLDVEFAQNSGIQSINFLESTYEGNHRIQALADISRIFE 204
                             |       9        19        29        39        49        59        69        79      | 89        99       109       119       129       139       149       159       169       179       189       199     
                             1-MSE                                                                               86-MSE

Chain D from PDB  Type:PROTEIN  Length:203
 aligned with A0A0H2URV7_S | A0A0H2URV7 from UniProtKB/TrEMBL  Length:206

    Alignment length:203
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202   
         A0A0H2URV7_S     3 KTAFIWDLDGTLLDSYEAILSGIEETFAQFSIPYDKEKVREFIFKYSVQDLLVRVAEDRNLDVEVLNQVRAQSLAEKNAQVVLMPGAREVLAWADESGIQQFIYTHKGNNAFTILKDLGVESYFTEILTSQSGFVRKPSPEAATYLLDKYQLNSDNTYYIGDRTLDVEFAQNSGIQSINFLESTYEGNHRIQALADISRIFET 205
               SCOP domains d2go7d_ D: Hypothetical protein SP2064                                                                                                                                                                      SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee......eehhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhh..eeeee....hhhhhhhhhh.hhhhh.eeehhhhh......hhhhhhhhhhh..hhh.eeeee.hhhhhhhhhhhh.eeee........eee....hhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2go7 D   3 KTAFIWDLDGTLLDSYEAILSGIEETFAQFSIPYDKEKVREFIFKYSVQDLLVRVAEDRNLDVEVLNQVRAQSLAEKNAQVVLmPGAREVLAWADESGIQQFIYTHKGNNAFTILKDLGVESYFTEILTSQSGFVRKPSPEAATYLLDKYQLNSDNTYYIGDRTLDVEFAQNSGIQSINFLESTYEGNHRIQALADISRIFET 205
                                    12        22        32        42        52        62        72        82   |    92       102       112       122       132       142       152       162       172       182       192       202   
                                                                                                              86-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

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Superfamilies( (-)

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Organisms( (-)

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Class: Alpha and beta proteins (a/b) (23833)

Fold: HAD-like (349)

Superfamily: HAD-like (349)

Family: beta-Phosphoglucomutase-like (27)

Protein domain: Hypothetical protein SP2064 (1)

Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313] (1)

1a	d2go7a1	A:3-206
1b	d2go7b_	B:
1c	d2go7c_	C:
1d	d2go7d_	D:

(no "CATH Domain" information available for 2GO7)

(no "Pfam Domain" information available for 2GO7)

Asymmetric Unit(hide GO term definitions)

(no "Gene Ontology" information available for 2GO7)

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	Cis Peptide Bonds
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		Lys C:139 - Pro C:140	[ RasMol ]
		Lys D:139 - Pro D:140	[ RasMol ]

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	A0A0H2URV7_S \| A0A0H2URV7	:	2msn 2mu1 2mu2

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