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(-) Description

Authors :  C. P. Chen, M. R. Ho, Y. C. Lou
Date :  12 Apr 06  (Deposition) - 12 Sep 06  (Release) - 24 Feb 09  (Revision)
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  C-Type Lectin, Fibril, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google))
Reference :  M. R. Ho, Y. C. Lou, W. C. Lin, P. C. Lyu, C. P. Chen
Human Pancreatitis-Associated Protein Forms Fibrillar Aggregate With Native-Like Conformation.
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    FragmentRESIDUES 1-137
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606

 Structural Features

(-) Chains, Units

NMR Structure (20x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2GO0)

(-) Sites  (0, 0)

(no "Site" information available for 2GO0)

(-) SS Bonds  (3, 3)

NMR Structure
1A:2 -A:13
2A:30 -A:133
3A:108 -A:125

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2GO0)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2GO0)

(-) PROSITE Motifs  (2, 2)

NMR Structure (2, 2)
1C_TYPE_LECTIN_2PS50041 C-type lectin domain profile.REG3A_HUMAN47-172  1A:9-134
2C_TYPE_LECTIN_1PS00615 C-type lectin domain signature.REG3A_HUMAN146-171  1A:108-133

(-) Exons   (4, 4)

NMR Structure (4, 4)
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:137
 aligned with REG3A_HUMAN | Q06141 from UniProtKB/Swiss-Prot  Length:175

    Alignment length:137
                                    48        58        68        78        88        98       108       118       128       138       148       158       168       
               SCOP domains d2go0a_ A: automated matches                                                                                                              SCOP domains
               CATH domains 2go0A00 A:1-137 Mannose-Binding Protein A, subunit A                                                                                      CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --------C_TYPE_LECTIN_2  PDB: A:9-134 UniProt: 47-172                                                                                 --- PROSITE (1)
                PROSITE (2) -----------------------------------------------------------------------------------------------------------C_TYPE_LECTIN_1           ---- PROSITE (2)
           Transcript 1 (1) Exon 1.2a  PDB: A:1-27     Exon 1.3  PDB: A:28-73 UniProt: 66-111        Exon 1.4  PDB: A:74-116 UniProt: 112-154   --------------------- Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------------------------------------------------------------------------------Exon 1.5b              Transcript 1 (2)
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure

(-) CATH Domains  (1, 1)

NMR Structure
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2GO0)

(-) Gene Ontology  (13, 13)

NMR Structure(hide GO term definitions)
Chain A   (REG3A_HUMAN | Q06141)
molecular function
    GO:0030246    carbohydrate binding    Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0006953    acute-phase response    An acute inflammatory response that involves non-antibody proteins whose concentrations in the plasma increase in response to infection or injury of homeothermic animals.
    GO:0008283    cell proliferation    The multiplication or reproduction of cells, resulting in the expansion of a cell population.
    GO:0007157    heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules    The attachment of an adhesion molecule in one cell to a nonidentical adhesion molecule in an adjacent cell.
    GO:0006954    inflammatory response    The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages.
    GO:0007275    multicellular organism development    The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
    GO:0045617    negative regulation of keratinocyte differentiation    Any process that stops, prevents, or reduces the frequency, rate or extent of keratinocyte differentiation.
    GO:0010838    positive regulation of keratinocyte proliferation    Any process that increases the rate, frequency or extent of keratinocyte proliferation. Keratinocyte proliferation is the multiplication or reproduction of keratinocytes, resulting in the expansion of a cell population.
    GO:0090303    positive regulation of wound healing    Any process that increases the rate, frequency, or extent of the series of events that restore integrity to a damaged tissue, following an injury.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.


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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

        REG3A_HUMAN | Q061411uv0 4mth

(-) Related Entries Specified in the PDB File