2GMV - JenaLib

Asym.Unit - manually (Jmol Viewer)

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   PEPCK COMPLEX WITH A GTP-COMPETITIVE INHIBITOR

Authors :   P. Dunten

Date :   07 Apr 06 (Deposition) - 29 May 07 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.30

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Gluconeogenesis, Xanthine, Inhibitor, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. L. Pietranico, L. H. Foley, N. Huby, W. Yun, P. Dunten, J. Vermeulen, P. Wang, K. Toth, G. Ramsey, M. L. Gubler, S. J. Wertheimer
C-8 Modifications Of 3-Alkyl-1, 8-Dibenzylxanthines As Inhibitors Of Human Cytosolic Phosphoenolpyruvate Carboxykinase.
Bioorg. Med. Chem. Lett. V. 17 3835 2007
PubMed-ID: 17532214 | Reference-DOI: 10.1016/J.BMCL.2007.05.013
(for further references see the PDB file header)

Molecule 1 - PHOSPHOENOLPYRUVATE CARBOXYKINASE, CYTOSOLIC
	Chains	:	A, B
	EC Number	:	4.1.1.32
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	PCK1
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	PHOSPHOENOLPYRUVATE CARBOXYLASE, PEPCK-C

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 5)

No.	Name	Count	Type	Full Name
1	MN	2	Ligand/Ion	MANGANESE (II) ION
2	PEP	2	Ligand/Ion	PHOSPHOENOLPYRUVATE
3	UN8	1	Ligand/Ion	N-(4-{[3-BUTYL-1-(2-FLUOROBENZYL)-2,6-DIOXO-2,3,6,7-TETRAHYDRO-1H-PURIN-8-YL]METHYL}PHENYL)-1-METHYL-1H-IMIDAZOLE-4-SULFONAMIDE

Biological Unit 1 (2, 2)

No.	Name	Count	Type	Full Name
1	MN	-1	Ligand/Ion	MANGANESE (II) ION
2	PEP	1	Ligand/Ion	PHOSPHOENOLPYRUVATE
3	UN8	1	Ligand/Ion	N-(4-{[3-BUTYL-1-(2-FLUOROBENZYL)-2,6-DIOXO-2,3,6,7-TETRAHYDRO-1H-PURIN-8-YL]METHYL}PHENYL)-1-METHYL-1H-IMIDAZOLE-4-SULFONAMIDE

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	MN	-1	Ligand/Ion	MANGANESE (II) ION
2	PEP	1	Ligand/Ion	PHOSPHOENOLPYRUVATE
3	UN8	-1	Ligand/Ion	N-(4-{[3-BUTYL-1-(2-FLUOROBENZYL)-2,6-DIOXO-2,3,6,7-TETRAHYDRO-1H-PURIN-8-YL]METHYL}PHENYL)-1-METHYL-1H-IMIDAZOLE-4-SULFONAMIDE

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	LYS A:244 , HIS A:264 , ASP A:311	BINDING SITE FOR RESIDUE MN A 701
2	AC2	SOFTWARE	LYS B:244 , HIS B:264 , ASP B:311	BINDING SITE FOR RESIDUE MN B 701
3	AC3	SOFTWARE	ALA A:86 , ARG A:87 , TYR A:235 , GLY A:236 , GLY A:237 , LYS A:244 , ASN A:403 , ARG A:405 , HOH A:776	BINDING SITE FOR RESIDUE PEP A 702
4	AC4	SOFTWARE	ALA B:86 , ARG B:87 , TYR B:235 , GLY B:236 , GLY B:237 , LYS B:244 , ASN B:403 , ARG B:405 , PHE B:485 , HOH B:715	BINDING SITE FOR RESIDUE PEP B 702
5	AC5	SOFTWARE	ALA A:287 , CYS A:288 , GLY A:289 , ASN A:292 , LEU A:293 , THR A:343 , TRP A:516 , PHE A:517 , PHE A:525 , TRP A:527 , PHE A:530 , ASN A:533 , HOH A:740	BINDING SITE FOR RESIDUE UN8 A 703

(no "SS Bond" information available for 2GMV)

Asymmetric Unit

No.	Residues
1	Leu A:200	-	Pro A:201
2	Leu B:200	-	Pro B:201

Asymmetric Unit (9, 18)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_021072	R	55	Q	PCKGC_HUMAN	Polymorphism	28383585	A/B	R	55	Q
2	UniProt	VAR_021073	M	60	T	PCKGC_HUMAN	Polymorphism	28383586	A/B	M	60	T
3	UniProt	VAR_021074	T	138	I	PCKGC_HUMAN	Polymorphism	28359542	A/B	T	138	I
4	UniProt	VAR_021075	V	184	L	PCKGC_HUMAN	Polymorphism	707555	A/B	L	184	L
5	UniProt	VAR_015575	I	267	V	PCKGC_HUMAN	Polymorphism	8192708	A/B	V	267	V
6	UniProt	VAR_021076	E	276	K	PCKGC_HUMAN	Polymorphism	11552145	A/B	E	276	K
7	UniProt	VAR_021077	V	368	I	PCKGC_HUMAN	Polymorphism	1804160	A/B	V	368	I
8	UniProt	VAR_021078	P	427	S	PCKGC_HUMAN	Polymorphism	28359550	A/B	P	427	S
9	UniProt	VAR_042444	E	586	D	PCKGC_HUMAN	Polymorphism	1042529	A/B	D	586	D

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (9, 9)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_021072	R	55	Q	PCKGC_HUMAN	Polymorphism	28383585	A	R	55	Q
2	UniProt	VAR_021073	M	60	T	PCKGC_HUMAN	Polymorphism	28383586	A	M	60	T
3	UniProt	VAR_021074	T	138	I	PCKGC_HUMAN	Polymorphism	28359542	A	T	138	I
4	UniProt	VAR_021075	V	184	L	PCKGC_HUMAN	Polymorphism	707555	A	L	184	L
5	UniProt	VAR_015575	I	267	V	PCKGC_HUMAN	Polymorphism	8192708	A	V	267	V
6	UniProt	VAR_021076	E	276	K	PCKGC_HUMAN	Polymorphism	11552145	A	E	276	K
7	UniProt	VAR_021077	V	368	I	PCKGC_HUMAN	Polymorphism	1804160	A	V	368	I
8	UniProt	VAR_021078	P	427	S	PCKGC_HUMAN	Polymorphism	28359550	A	P	427	S
9	UniProt	VAR_042444	E	586	D	PCKGC_HUMAN	Polymorphism	1042529	A	D	586	D

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (9, 9)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_021072	R	55	Q	PCKGC_HUMAN	Polymorphism	28383585	B	R	55	Q
2	UniProt	VAR_021073	M	60	T	PCKGC_HUMAN	Polymorphism	28383586	B	M	60	T
3	UniProt	VAR_021074	T	138	I	PCKGC_HUMAN	Polymorphism	28359542	B	T	138	I
4	UniProt	VAR_021075	V	184	L	PCKGC_HUMAN	Polymorphism	707555	B	L	184	L
5	UniProt	VAR_015575	I	267	V	PCKGC_HUMAN	Polymorphism	8192708	B	V	267	V
6	UniProt	VAR_021076	E	276	K	PCKGC_HUMAN	Polymorphism	11552145	B	E	276	K
7	UniProt	VAR_021077	V	368	I	PCKGC_HUMAN	Polymorphism	1804160	B	V	368	I
8	UniProt	VAR_021078	P	427	S	PCKGC_HUMAN	Polymorphism	28359550	B	P	427	S
9	UniProt	VAR_042444	E	586	D	PCKGC_HUMAN	Polymorphism	1042529	B	D	586	D

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PEPCK_GTP	PS00505	Phosphoenolpyruvate carboxykinase (GTP) signature.	PCKGC_HUMAN	284-292	2	A:284-292 B:284-292

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PEPCK_GTP	PS00505	Phosphoenolpyruvate carboxykinase (GTP) signature.	PCKGC_HUMAN	284-292	1	A:284-292 -

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PEPCK_GTP	PS00505	Phosphoenolpyruvate carboxykinase (GTP) signature.	PCKGC_HUMAN	284-292	1	- B:284-292

Asymmetric Unit (9, 18)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1a	ENST00000319441	1a	ENSE00001170096	chr20:56136136-56136259	124	PCKGC_HUMAN	-	0	0	-	-
1.1d	ENST00000319441	1d	ENSE00000845753	chr20:56136428-56136691	264	PCKGC_HUMAN	1-75	75	2	A:10-75 B:10-75	66 66
1.1f	ENST00000319441	1f	ENSE00000845754	chr20:56137127-56137308	182	PCKGC_HUMAN	75-136	62	2	A:75-136 B:75-136	62 62
1.1h	ENST00000319441	1h	ENSE00000845755	chr20:56137752-56137955	204	PCKGC_HUMAN	136-204	69	2	A:136-204 B:136-204	69 69
1.1j	ENST00000319441	1j	ENSE00000845756	chr20:56138084-56138271	188	PCKGC_HUMAN	204-266	63	2	A:204-266 B:204-266	63 63
1.1m	ENST00000319441	1m	ENSE00000845757	chr20:56138621-56138783	163	PCKGC_HUMAN	267-321	55	2	A:267-321 B:267-321	55 55
1.1o	ENST00000319441	1o	ENSE00000845758	chr20:56139225-56139449	225	PCKGC_HUMAN	321-396	76	2	A:321-396 B:321-396	76 76
1.1p	ENST00000319441	1p	ENSE00000845759	chr20:56139538-56139669	132	PCKGC_HUMAN	396-440	45	2	A:396-440 B:396-440	45 45
1.1q	ENST00000319441	1q	ENSE00000845760	chr20:56140096-56140191	96	PCKGC_HUMAN	440-472	33	2	A:440-464 B:440-464	25 25
1.2c	ENST00000319441	2c	ENSE00001259794	chr20:56140406-56141513	1108	PCKGC_HUMAN	472-622	151	2	A:473-622 (gaps) B:473-622 (gaps)	150 150

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:602
 aligned with PCKGC_HUMAN | P35558 from UniProtKB/Swiss-Prot  Length:622

    Alignment length:613
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619   
          PCKGC_HUMAN    10 NLSAKVVQGSLDSLPQAVREFLENNAELCQPDHIHICDGSEEENGRLLGQMEEEGILRRLKKYDNCWLALTDPRDVARIESKTVIVTQEQRDTVPIPKTGLSQLGRWMSEEDFEKAFNARFPGCMKGRTMYVIPFSMGPLGSPLSKIGIELTDSPYVVASMRIMTRMGTPVLEAVGDGEFVKCLHSVGCPLPLQKPLVNNWPCNPELTLIAHLPDRREIISFGSGYGGNSLLGKKCFALRMASRLAKEEGWLAEHMLILGITNPEGEKKYLAAAFPSACGKTNLAMMNPSLPGWKVECVGDDIAWMKFDAQGHLRAINPENGFFGVAPGTSVKTNPNAIKTIQKNTIFTNVAETSDGGVYWEGIDEPLASGVTITSWKNKEWSSEDGEPCAHPNSRFCTPASQCPIIDAAWESPEGVPIEGIIFGGRRPAGVPLVYEALSWQHGVFVGAAMRSEATAAAEHKGKIIMHDPFAMRPFFGYNFGKYLAHWLSMAQHPAAKLPKIFHVNWFRKDKEGKFLWPGFGENSRVLEWMFNRIDGKASTKLTPIGYIPKEDALNLKGLGHINMMELFSISKEFWEKEVEDIEKYLEDQVNADLPCEIEREILALKQRISQM 622
               SCOP domains d2gmva2 A:10-259 Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing)                                                                                                                                                                            d2gmva1 A:260-622 Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing)                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains 2gmvA01 A:10-63,A:90-258                              --2gmvA02             ----2gmvA01 A:10-63,A:90-258 Phosphoenolpyruvate Carboxykinase, domain 1                                                                                                     -2gmvA03 A:260-330,A:416-620  [code=3.90.228.20, no name defined]       -2gmvA02 A:66-85,A:332-413 Phosphoenolpyruvate Carboxykinase, domain 2             --2gmvA03 A:260-330,A:416-620  [code=3.90.228.20, n        o name defined]                                                                                                                                     -- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eee.hhhhhhhhhhhhhhhhhhhhh..eeee...hhhhhhhhhhhhhhh..eee.......eee.........hhh.eee...hhhhh...............hhhhhhhhhhh.........eeeeeeeee........eeeeeee.hhhhhhhhhhhheehhhhhhhhh....eeeeee.................hhhhheeeee....eeeee...hhhhhh.......hhhhhhhhhhhh.eee..eeeeee.....eeeeeee.....hhhhhhh........eeeeee...eeeee.....eeee....eeeee........hhhhhhhh....eee..eee....ee.............ee.....ee.............eeeee.hhh............eeeeeeeee.........eee..hhhhhhhhhhh.eee.--------..eee.hhhh......hhhhhhhhhhhhhhh......eeeee..............hhhhhhhhhhhhhhhhh.---.eee..eee..............hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------Q----T-----------------------------------------------------------------------------I---------------------------------------------L----------------------------------------------------------------------------------V--------K-------------------------------------------------------------------------------------------I----------------------------------------------------------S--------------------------------------------------------------------------------------------------------------------------------------------------------------D------------------------------------ SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PEPCK_GTP------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 1 (1) Exon 1.1d  PDB: A:10-75 UniProt: 1-75 [INCOMPLETE]                ------------------------------------------------------------Exon 1.1h  PDB: A:136-204 UniProt: 136-204                           --------------------------------------------------------------Exon 1.1m  PDB: A:267-321 UniProt: 267-321             --------------------------------------------------------------------------Exon 1.1p  PDB: A:396-440 UniProt: 396-440   -------------------------------Exon 1.2c  PDB: A:473-622 (gaps) UniProt: 472-622 [INCOMPLETE]                                                                                          Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------------------------Exon 1.1f  PDB: A:75-136 UniProt: 75-136                      -------------------------------------------------------------------Exon 1.1j  PDB: A:204-266 UniProt: 204-266                     ------------------------------------------------------Exon 1.1o  PDB: A:321-396 UniProt: 321-396                                  -------------------------------------------Exon 1.1q  PDB: A:440-464        ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript 1 (2)
                 2gmv A  10 NLSAKVVQGSLDSLPQAVREFLENNAELCQPDHIHICDGSEEENGRLLGQMEEEGILRRLKKYDNCWLALTDPRDVARIESKTVIVTQEQRDTVPIPKTGLSQLGRWMSEEDFEKAFNARFPGCMKGRTMYVIPFSMGPLGSPLSKIGIELTDSPYVVASMRIMTRMGTPVLEALGDGEFVKCLHSVGCPLPLQKPLVNNWPCNPELTLIAHLPDRREIISFGSGYGGNSLLGKKCFALRMASRLAKEEGWLAEHMLVLGITNPEGEKKYLAAAFPSACGKTNLAMMNPSLPGWKVECVGDDIAWMKFDAQGHLRAINPENGFFGVAPGTSVKTNPNAIKTIQKNTIFTNVAETSDGGVYWEGIDEPLASGVTITSWKNKEWSSEDGEPCAHPNSRFCTPASQCPIIDAAWESPEGVPIEGIIFGGRRPAGVPLVYEALSWQHGVFVGAAMRSEA--------KIIMHDPFAMRPFFGYNFGKYLAHWLSMAQHPAAKLPKIFHVNWFRKDKEGKFLWPGFGENSRVLEWMFNRIDG---TKLTPIGYIPKEDALNLKGLGHINMMELFSISKEFWDKEVEDIEKYLVDQVNADLPCEIEREILALKQRISQM 622
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459    |    -   |   479       489       499       509       519       529       539      |  -|      559       569       579       589       599       609       619   
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                464      473                                                                      546 550

Chain B from PDB  Type:PROTEIN  Length:602
 aligned with PCKGC_HUMAN | P35558 from UniProtKB/Swiss-Prot  Length:622

    Alignment length:613
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619   
          PCKGC_HUMAN    10 NLSAKVVQGSLDSLPQAVREFLENNAELCQPDHIHICDGSEEENGRLLGQMEEEGILRRLKKYDNCWLALTDPRDVARIESKTVIVTQEQRDTVPIPKTGLSQLGRWMSEEDFEKAFNARFPGCMKGRTMYVIPFSMGPLGSPLSKIGIELTDSPYVVASMRIMTRMGTPVLEAVGDGEFVKCLHSVGCPLPLQKPLVNNWPCNPELTLIAHLPDRREIISFGSGYGGNSLLGKKCFALRMASRLAKEEGWLAEHMLILGITNPEGEKKYLAAAFPSACGKTNLAMMNPSLPGWKVECVGDDIAWMKFDAQGHLRAINPENGFFGVAPGTSVKTNPNAIKTIQKNTIFTNVAETSDGGVYWEGIDEPLASGVTITSWKNKEWSSEDGEPCAHPNSRFCTPASQCPIIDAAWESPEGVPIEGIIFGGRRPAGVPLVYEALSWQHGVFVGAAMRSEATAAAEHKGKIIMHDPFAMRPFFGYNFGKYLAHWLSMAQHPAAKLPKIFHVNWFRKDKEGKFLWPGFGENSRVLEWMFNRIDGKASTKLTPIGYIPKEDALNLKGLGHINMMELFSISKEFWEKEVEDIEKYLEDQVNADLPCEIEREILALKQRISQM 622
               SCOP domains d2gmvb2 B:10-259 Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing)                                                                                                                                                                            d2gmvb1 B:260-622 Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing)                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains 2gmvB01 B:10-63,B:90-258                              --2gmvB02             ----2gmvB01 B:10-63,B:90-258 Phosphoenolpyruvate Carboxykinase, domain 1                                                                                                     -2gmvB03 B:260-330,B:416-620  [code=3.90.228.20, no name defined]       -2gmvB02 B:66-85,B:332-413 Phosphoenolpyruvate Carboxykinase, domain 2             --2gmvB03 B:260-330,B:416-620  [code=3.90.228.20, n        o name defined]                                                                                                                                     -- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhh.eee.hhhhhhhhhhhhhhhhhhhhh..eeee...hhhhhhhhhhhhhh...eeee.....eeee.........hhh.eee...hhhhhh..............hhhhhhhhhhh.........eeeeeeeee........eeeeeee.hhhhhhhhhhhheehhhhhhhhh....eeeeee......................eeeeehhh.eeeee...hhhhhh.......hhhhhhhhhhhh.eee..eeeee........eeee......hhhhhhh.........eeeee...eeeee.....eeee....eeeee........hhhhhhhh....eee..eee....ee.............ee.....eehhhhh........eeeee.hhh............ee...ee...........eee..hhhhhhhhhh..eee.--------..eee.hhhh......hhhhhhhhhhhhhhh.......eeee..............hhhhhhhhhhhhhhhhhh---.......................hhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------Q----T-----------------------------------------------------------------------------I---------------------------------------------L----------------------------------------------------------------------------------V--------K-------------------------------------------------------------------------------------------I----------------------------------------------------------S--------------------------------------------------------------------------------------------------------------------------------------------------------------D------------------------------------ SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PEPCK_GTP------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 1 (1) Exon 1.1d  PDB: B:10-75 UniProt: 1-75 [INCOMPLETE]                ------------------------------------------------------------Exon 1.1h  PDB: B:136-204 UniProt: 136-204                           --------------------------------------------------------------Exon 1.1m  PDB: B:267-321 UniProt: 267-321             --------------------------------------------------------------------------Exon 1.1p  PDB: B:396-440 UniProt: 396-440   -------------------------------Exon 1.2c  PDB: B:473-622 (gaps) UniProt: 472-622 [INCOMPLETE]                                                                                          Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------------------------Exon 1.1f  PDB: B:75-136 UniProt: 75-136                      -------------------------------------------------------------------Exon 1.1j  PDB: B:204-266 UniProt: 204-266                     ------------------------------------------------------Exon 1.1o  PDB: B:321-396 UniProt: 321-396                                  -------------------------------------------Exon 1.1q  PDB: B:440-464        ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript 1 (2)
                 2gmv B  10 NLSAKVVQGSLDSLPQAVREFLENNAELCQPDHIHICDGSEEENGRLLGQMEEEGILRRLKKYDNCWLALTDPRDVARIESKTVIVTQEQRDTVPIPKTGLSQLGRWMSEEDFEKAFNARFPGCMKGRTMYVIPFSMGPLGSPLSKIGIELTDSPYVVASMRIMTRMGTPVLEALGDGEFVKCLHSVGCPLPLQKPLVNNWPCNPELTLIAHLPDRREIISFGSGYGGNSLLGKKCFALRMASRLAKEEGWLAEHMLVLGITNPEGEKKYLAAAFPSACGKTNLAMMNPSLPGWKVECVGDDIAWMKFDAQGHLRAINPENGFFGVAPGTSVKTNPNAIKTIQKNTIFTNVAETSDGGVYWEGIDEPLASGVTITSWKNKEWSSEDGEPCAHPNSRFCTPASQCPIIDAAWESPEGVPIEGIIFGGRRPAGVPLVYEALSWQHGVFVGAAMRSEA--------KIIMHDPFAMRPFFGYNFGKYLAHWLSMAQHPAAKLPKIFHVNWFRKDKEGKFLWPGFGENSRVLEWMFNRIDG---TKLTPIGYIPKEDALNLKGLGHINMMELFSISKEFWDKEVEDIEKYLVDQVNADLPCEIEREILALKQRISQM 622
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459    |    -   |   479       489       499       509       519       529       539      |  -|      559       569       579       589       599       609       619   
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                464      473                                                                      546 550

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Phosphoenolpyruvate Carboxykinase; domain 1 (42)

Homologous Superfamily: Phosphoenolpyruvate Carboxykinase, domain 1 (42)

Human (Homo sapiens) (7)

1a	2gmvA01	A:10-63,A:90-258
1b	2gmvB01	B:10-63,B:90-258

Architecture: Alpha-Beta Complex (3881)

Topology: Phosphoenolpyruvate Carboxykinase; domain 3 (62)

Homologous Superfamily: [code=3.90.228.20, no name defined] (42)

Human (Homo sapiens) (7)

2a	2gmvA03	A:260-330,A:416-620
2b	2gmvB03	B:260-330,B:416-620

Class: Mainly Beta (13760)

Architecture: Beta Complex (381)

Topology: Phosphoenolpyruvate Carboxykinase; domain 2 (42)

Homologous Superfamily: Phosphoenolpyruvate Carboxykinase, domain 2 (42)

Human (Homo sapiens) (7)

3a	2gmvA02	A:66-85,A:332-413
3b	2gmvB02	B:66-85,B:332-413

(no "Pfam Domain" information available for 2GMV)

Asymmetric Unit(hide GO term definitions)

Chain A,B (PCKGC_HUMAN | P35558)

molecular function
	GO:0019003	GDP binding	Interacting selectively and non-covalently with GDP, guanosine 5'-diphosphate.
	GO:0005525	GTP binding	Interacting selectively and non-covalently with GTP, guanosine triphosphate.
	GO:0016831	carboxy-lyase activity	Catalysis of the nonhydrolytic addition or removal of a carboxyl group to or from a compound.
	GO:0031406	carboxylic acid binding	Interacting selectively and non-covalently with a carboxylic acid, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-).
	GO:0016829	lyase activity	Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
	GO:0000287	magnesium ion binding	Interacting selectively and non-covalently with magnesium (Mg) ions.
	GO:0030145	manganese ion binding	Interacting selectively and non-covalently with manganese (Mn) ions.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0004613	phosphoenolpyruvate carboxykinase (GTP) activity	Catalysis of the reaction: GTP + oxaloacetate = GDP + phosphoenolpyruvate + CO2.
	GO:0004611	phosphoenolpyruvate carboxykinase activity	Catalysis of the reaction: source of phosphate + oxaloacetate = phosphoenolpyruvate + CO2 + other reaction products.
	GO:0017076	purine nucleotide binding	Interacting selectively and non-covalently with purine nucleotides, any compound consisting of a purine nucleoside esterified with (ortho)phosphate.
biological process
	GO:0051365	cellular response to potassium ion starvation	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of potassium ions.
	GO:0006094	gluconeogenesis	The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol.
	GO:0042593	glucose homeostasis	Any process involved in the maintenance of an internal steady state of glucose within an organism or cell.
	GO:0006006	glucose metabolic process	The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides.
	GO:0046327	glycerol biosynthetic process from pyruvate	The chemical reactions and pathways resulting in the formation of glycerol, 1,2,3-propanetriol, from other compounds, including pyruvate.
	GO:0006475	internal protein amino acid acetylation	The addition of an acetyl group to a non-terminal amino acid in a protein.
	GO:0006629	lipid metabolic process	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
	GO:0006107	oxaloacetate metabolic process	The chemical reactions and pathways involving oxaloacetate, the anion of oxobutanedioic acid, an important intermediate in metabolism, especially as a component of the TCA cycle.
	GO:0061402	positive regulation of transcription from RNA polymerase II promoter in response to acidic pH	Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a pH stimulus with pH < 7.
	GO:0014823	response to activity	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an activity stimulus.
	GO:0032868	response to insulin	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.

Asymmetric Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		MN	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		PEP	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		UN8	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Leu A:200 - Pro A:201	[ RasMol ]
		Leu B:200 - Pro B:201	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format \| Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	2gmv
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	PCKGC_HUMAN \| P35558
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	4.1.1.32
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	PCKGC_HUMAN \| P35558
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	PCKGC_HUMAN \| P35558	:	1khb 1khe 1khf 1khg 1m51 1nhx

1khb	PEPCK COMPLEX WITH A GTP ANALOG
1m51	PEPCK COMPLEX WITH AN INHIBITOR
1nhx	PEPCK COMPLEX WITH AN INHIBITOR

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 5)

Sites (5, 5)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (9, 18)

PROSITE Motifs (1, 2)

Exons (9, 18)

Sequences/Alignments

Classification and Annotation

SCOP Domains (2, 4)

CATH Domains (3, 6)

Pfam Domains (0, 0)

Gene Ontology (26, 26)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File