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(-) Description

Title :  SOLUTION CONFORMATION OF SALMON CALCITONIN IN SODIUM DODECYL SULFATE MICELLES
 
Authors :  G. Andreotti, B. Lopez-Mendez, P. Amodeo, M. A. Morelli, H. Nakamuta, A. Motta
Date :  04 Apr 06  (Deposition) - 20 Jun 06  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (100x)
Keywords :  A-Helix, Hormone/Growth Factor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Andreotti, B. L. Mendez, P. Amodeo, M. A. Morelli, H. Nakamuta, A. Motta
Structural Determinants Of Salmon Calcitonin Bioactivity: The Role Of The Leu-Based Amphipathic Alpha-Helix.
J. Biol. Chem. V. 281 24193 2006
PubMed-ID: 16766525  |  Reference-DOI: 10.1074/JBC.M603528200
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CALCITONIN-1
    Chains: A
    Engineered: YES
    Other Details: PEPTIDE SYNTHESIS
    Synthetic: YES

 Structural Features

(-) Chains, Units

  
NMR Structure (100x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
1NH21Mod. Amino AcidAMINO GROUP

(-) Sites  (1, 1)

NMR Structure (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:32BINDING SITE FOR RESIDUE NH2 A 33

(-) SS Bonds  (1, 1)

NMR Structure
No.Residues
1A:1 -A:7

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2GLH)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2GLH)

(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CALCITONINPS00258 Calcitonin / CGRP / IAPP family signature.CALC1_ONCKE83-98  1A:1-16

(-) Exons   (0, 0)

(no "Exon" information available for 2GLH)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:33
 aligned with CALC1_ONCKE | P01263 from UniProtKB/Swiss-Prot  Length:136

    Alignment length:33
                                    92       102       112   
          CALC1_ONCKE    83 CSNLSTCVLGKLSQELHKLQTYPRTNTGSGTPG 115
               SCOP domains d2glha1 A:1-32 Calcitonin       - SCOP domains
               CATH domains --------------------------------- CATH domains
               Pfam domains --------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) --------------------------------- SAPs(SNPs)
                    PROSITE CALCITONIN      ----------------- PROSITE
                 Transcript --------------------------------- Transcript
                 2glh A   1 CSNLSTCVLGKLSQELHKLQTYPRTNTGSGTPx  33
                                    10        20        30  |
                                                           33-NH2
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Peptides (792)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2GLH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2GLH)

(-) Gene Ontology  (7, 7)

NMR Structure(hide GO term definitions)
Chain A   (CALC1_ONCKE | P01263)
molecular function
    GO:0031716    calcitonin receptor binding    Interacting selectively and non-covalently with a calcitonin receptor.
    GO:0005179    hormone activity    The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects; all bind receptors and trigger some biological process.
biological process
    GO:0007190    activation of adenylate cyclase activity    Any process that initiates the activity of the inactive enzyme adenylate cyclase.
    GO:0051482    positive regulation of cytosolic calcium ion concentration involved in phospholipase C-activating G-protein coupled signaling pathway    Any process that increases the concentration of calcium ions in the cytosol that occurs as part of a PLC-activating G-protein coupled receptor signaling pathway. G-protein-activated PLC hydrolyses phosphatidylinositol-bisphosphate (PIP2) to release diacylglycerol (DAG) and inositol trisphosphate (IP3). IP3 then binds to calcium release channels in the endoplasmic reticulum (ER) to trigger calcium ion release into the cytosol.
    GO:0048240    sperm capacitation    A process required for sperm to reach fertilization competence. Sperm undergo an incompletely understood series of morphological and molecular maturational processes, termed capacitation, involving, among other processes, protein tyrosine phosphorylation and increased intracellular calcium.
cellular component
    GO:0005623    cell    The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CALC1_ONCKE | P01263: 2glg

(-) Related Entries Specified in the PDB File

2glg [L23,A24]-SALMON CALCITONIN MUTANT