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(-) Description

Title :  PROTEIN OF UNKNOWN FUNCTION NMB0488 FROM NEISSERIA MENINGITIDIS
 
Authors :  J. Osipiuk, L. Volkart, M. Bargassa, A. Joachimiak, Midwest Center F Structural Genomics (Mcsg)
Date :  03 Apr 06  (Deposition) - 02 May 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.35
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Genomics, Apc83854, Hypothetical Protein, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Osipiuk, L. Volkart, M. Bargassa, A. Joachimiak
X-Ray Crystal Structure Of Hypothetical Protein Nmb0488 Fro Neisseria Meningitidis.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN NMB0488
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: NMB0488
    Organism Scientific: NEISSERIA MENINGITIDIS
    Organism Taxid: 122586
    Strain: MC58

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 6)

Asymmetric/Biological Unit (4, 6)
No.NameCountTypeFull Name
1BME1Ligand/IonBETA-MERCAPTOETHANOL
2EDO1Ligand/Ion1,2-ETHANEDIOL
3MSE3Mod. Amino AcidSELENOMETHIONINE
4NA1Ligand/IonSODIUM ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:14 , GLN A:23 , TRP A:25BINDING SITE FOR RESIDUE NA A 403
2AC2SOFTWARESER A:110 , ASP A:112 , SER A:123 , PRO A:124 , SER A:125 , HOH A:641BINDING SITE FOR RESIDUE EDO A 402
3AC3SOFTWAREVAL A:89 , CYS A:93 , LYS A:99 , THR A:100 , ARG A:101 , HOH A:432 , HOH A:674 , HOH A:723BINDING SITE FOR RESIDUE BME A 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2GKP)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2GKP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2GKP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2GKP)

(-) Exons   (0, 0)

(no "Exon" information available for 2GKP)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:164
 aligned with Q9K0T5_NEIMB | Q9K0T5 from UniProtKB/TrEMBL  Length:164

    Alignment length:164
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160    
         Q9K0T5_NEIMB     1 MTFNQEQDYWAGYKANERALIIQTWSGFGRYAPDHLYPPHILPLDTDNETLGTTVLQALANSRTFVYDSPEDQDFFDTEKIRQRYEDWVAKLCGNLGYKTRRALFKNMMSVDIWLHNGCLKISPSRHVKLEAWDAIDADDVILSLDNSPEEIGAGLKLALSRCR 164
               SCOP domains d2gkpa1 A:1-164 Hypothetical protein NMB0488                                                                                                                         SCOP domains
               CATH domains -2gkpA00 A:2-164 NMB0488-like domain                                                                                                                                 CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeeee....eeeeeeee...eee......eee....hhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhh..eeeeeeee..eeeee.eeeee..eeee.....eeee...hhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gkp A   1 mTFNQEQDYWAGYKANERALIIQTWSGFGRYAPDHLYPPHILPLDTDNETLGTTVLQALANSRTFVYDSPEDQDFFDTEKIRQRYEDWVAKLCGNLGYKTRRALFKNmmSVDIWLHNGCLKISPSRHVKLEAWDAIDADDVILSLDNSPEEIGAGLKLALSRCR 164
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160    
                            |                                                                                                        108-MSE                                                    
                            1-MSE                                                                                                     109-MSE
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2GKP)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2GKP)

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