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(-) Description

Title :  CYTOPLASMIC PROTEIN STM3548 FROM SALMONELLA TYPHIMURIUM
 
Authors :  T. Petrova, M. E. Cuff, R. Y. Wu, D. Holzle, A. Joachimiak, Midwest Cent Structural Genomics (Mcsg)
Date :  31 Mar 06  (Deposition) - 02 May 06  (Release) - 03 Aug 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.25
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Salmonella Typhimurium, Stm3548, Structural Genomics, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Petrova, M. E. Cuff, R. Wu, Y. Kim, D. Holzle, A. Joachimiak
Novel Hexamerization Motif Is Discovered In A Conserved Cytoplasmic Protein From Salmonella Typhimurium.
J. Struct. Funct. Genom. V. 8 19 2007
PubMed-ID: 17968677  |  Reference-DOI: 10.1007/S10969-007-9028-1

(-) Compounds

Molecule 1 - PUTATIVE CYTOPLASMIC PROTEIN
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: DUF1355
    Organism Scientific: SALMONELLA TYPHIMURIUM
    Organism Taxid: 99287
    Strain: LT2

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 48)

Asymmetric/Biological Unit (2, 48)
No.NameCountTypeFull Name
1GOL6Ligand/IonGLYCEROL
2MSE42Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:82 , TYR A:124 , ASP A:223 , PRO A:226 , HIS A:227 , TRP A:228BINDING SITE FOR RESIDUE GOL A 1001
2AC2SOFTWAREASP B:82 , TYR B:124 , ASP B:223 , SER B:225 , PRO B:226 , HIS B:227 , TRP B:228BINDING SITE FOR RESIDUE GOL B 1002
3AC3SOFTWAREASP C:82 , TYR C:124 , ASP C:223 , PRO C:226 , HIS C:227 , TRP C:228BINDING SITE FOR RESIDUE GOL C 1003
4AC4SOFTWAREASP D:82 , TYR D:124 , ASP D:223 , PRO D:226 , HIS D:227 , TRP D:228BINDING SITE FOR RESIDUE GOL D 1004
5AC5SOFTWAREASP F:82 , TYR F:124 , ASP F:223 , PRO F:226 , HIS F:227 , TRP F:228 , HOH F:1072BINDING SITE FOR RESIDUE GOL F 1005
6AC6SOFTWAREASP E:82 , TYR E:124 , ASP E:223 , PRO E:226 , HIS E:227 , TRP E:228BINDING SITE FOR RESIDUE GOL E 1006

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2GK3)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric/Biological Unit
No.Residues
1Pro A:226 -His A:227
2Ala B:191 -Arg B:192
3Pro B:226 -His B:227
4Pro C:226 -His C:227
5Arg C:252 -Lys C:253
6Pro D:226 -His D:227
7Pro E:226 -His E:227
8Pro F:226 -His F:227

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2GK3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2GK3)

(-) Exons   (0, 0)

(no "Exon" information available for 2GK3)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:246
 aligned with Q8ZLF9_SALTY | Q8ZLF9 from UniProtKB/TrEMBL  Length:253

    Alignment length:246
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247      
         Q8ZLF9_SALTY     8 LKVLFIGESWHIHMIHSKGYDSFTSSKYEEGATWLLECLRKGGVDIDYMPAHTVQIAFPESIDELNRYDVIVISDIGSNTFLLQNETFYQLKIKPNALESIKEYVKNGGGLLMIGGYLSFMGIEAKANYKNTVLAEVLPVIMLDGDDRVEKPEGICAEAVSPEHPVVNGFSDYPVFLGYNQAVARDDADVVLTINNDPLLVFGEYQQGKTACFMSDCSPHWGTQQFMSWPFYTDLWVNTLQFIARK 253
               SCOP domains d2gk3a1 A:8-253 Putative cytoplasmic protein STM3548                                                                                                                                                                                                   SCOP domains
               CATH domains 2gk3A00 A:8-253  [code=3.40.50.880, no name defined]                                                                                                                                                                                                   CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee.eeeeeeeeee..eeeeeeeeee.hhhhhhhhhhh..eeeeehhhhhhhh...hhhhhhh..eeeee..hhhhhhhhhhhhh......hhhhhhhhhhhh..eeeee.......hhhhh.hhhhh.hhhhh.eee.....eeeeeeeeeeee...............eeeeee.eee....eeeeee..eeeeeeeee..eeeeee.........hhhhhh..hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2gk3 A   8 LKVLFIGESWHIHmIHSKGYDSFTSSKYEEGATWLLECLRKGGVDIDYmPAHTVQIAFPESIDELNRYDVIVISDIGSNTFLLQNETFYQLKIKPNALESIKEYVKNGGGLLmIGGYLSFmGIEAKANYKNTVLAEVLPVImLDGDDRVEKPEGICAEAVSPEHPVVNGFSDYPVFLGYNQAVARDDADVVLTINNDPLLVFGEYQQGKTACFmSDCSPHWGTQQFmSWPFYTDLWVNTLQFIARK 253
                                    17   |    27        37        47        57        67        77        87        97       107       117  |    127|      137       147 |     157       167       177       187       197       207       217   |   227      |237       247      
                                        21-MSE                             56-MSE                                                         120-MSE 128-MSE              149-MSE                                                                 221-MSE      234-MSE               


Chain B from PDB  Type:PROTEIN  Length:246
 aligned with Q8ZLF9_SALTY | Q8ZLF9 from UniProtKB/TrEMBL  Length:253

    Alignment length:246
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247      
         Q8ZLF9_SALTY     8 LKVLFIGESWHIHMIHSKGYDSFTSSKYEEGATWLLECLRKGGVDIDYMPAHTVQIAFPESIDELNRYDVIVISDIGSNTFLLQNETFYQLKIKPNALESIKEYVKNGGGLLMIGGYLSFMGIEAKANYKNTVLAEVLPVIMLDGDDRVEKPEGICAEAVSPEHPVVNGFSDYPVFLGYNQAVARDDADVVLTINNDPLLVFGEYQQGKTACFMSDCSPHWGTQQFMSWPFYTDLWVNTLQFIARK 253
               SCOP domains d2gk3b_ B: Putative cytoplasmic protein STM3548                                                                                                                                                                                                        SCOP domains
               CATH domains 2gk3B00 B:8-253  [code=3.40.50.880, no name defined]                                                                                                                                                                                                   CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee.eeeeeeeeee..eeeeeeeeee.hhhhhhhhhhh..eeeeehhhhhhhhh..hhhhhh...eeeee..hhhhhhhhhhhhh......hhhhhhhhhhhh..eeeee.......hhhhh.hhhhh.hhhhh..ee.....eeeeeeeeeeee...............eeeeee.ee.....eeeeee..eeeeeeeee..eeeeee.........hhhhhhh.hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2gk3 B   8 LKVLFIGESWHIHmIHSKGYDSFTSSKYEEGATWLLECLRKGGVDIDYmPAHTVQIAFPESIDELNRYDVIVISDIGSNTFLLQNETFYQLKIKPNALESIKEYVKNGGGLLmIGGYLSFmGIEAKANYKNTVLAEVLPVImLDGDDRVEKPEGICAEAVSPEHPVVNGFSDYPVFLGYNQAVARDDADVVLTINNDPLLVFGEYQQGKTACFmSDCSPHWGTQQFmSWPFYTDLWVNTLQFIARK 253
                                    17   |    27        37        47        57        67        77        87        97       107       117  |    127|      137       147 |     157       167       177       187       197       207       217   |   227      |237       247      
                                        21-MSE                             56-MSE                                                         120-MSE 128-MSE              149-MSE                                                                 221-MSE      234-MSE               


Chain C from PDB  Type:PROTEIN  Length:246
 aligned with Q8ZLF9_SALTY | Q8ZLF9 from UniProtKB/TrEMBL  Length:253

    Alignment length:246
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247      
         Q8ZLF9_SALTY     8 LKVLFIGESWHIHMIHSKGYDSFTSSKYEEGATWLLECLRKGGVDIDYMPAHTVQIAFPESIDELNRYDVIVISDIGSNTFLLQNETFYQLKIKPNALESIKEYVKNGGGLLMIGGYLSFMGIEAKANYKNTVLAEVLPVIMLDGDDRVEKPEGICAEAVSPEHPVVNGFSDYPVFLGYNQAVARDDADVVLTINNDPLLVFGEYQQGKTACFMSDCSPHWGTQQFMSWPFYTDLWVNTLQFIARK 253
               SCOP domains d2gk3c_ C: Putative cytoplasmic protein STM3548                                                                                                                                                                                                        SCOP domains
               CATH domains 2gk3C00 C:8-253  [code=3.40.50.880, no name defined]                                                                                                                                                                                                   CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee.eeeeeeeeee..eeeeeeeeee.hhhhhhhhhhh..eeeeehhhhhhhh...hhhhhhh..eeeee..hhhhhhhhhhhhh......hhhhhhhhhhhh..eeeee.......hhhhh.hhhhh.hhhhh.eee.....eeeeeeeeeeee...............eeeeee.eee....eeeeee..eeeeeeeee..eeeeee.........hhhhhh..hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2gk3 C   8 LKVLFIGESWHIHmIHSKGYDSFTSSKYEEGATWLLECLRKGGVDIDYmPAHTVQIAFPESIDELNRYDVIVISDIGSNTFLLQNETFYQLKIKPNALESIKEYVKNGGGLLmIGGYLSFmGIEAKANYKNTVLAEVLPVImLDGDDRVEKPEGICAEAVSPEHPVVNGFSDYPVFLGYNQAVARDDADVVLTINNDPLLVFGEYQQGKTACFmSDCSPHWGTQQFmSWPFYTDLWVNTLQFIARK 253
                                    17   |    27        37        47        57        67        77        87        97       107       117  |    127|      137       147 |     157       167       177       187       197       207       217   |   227      |237       247      
                                        21-MSE                             56-MSE                                                         120-MSE 128-MSE              149-MSE                                                                 221-MSE      234-MSE               


Chain D from PDB  Type:PROTEIN  Length:246
 aligned with Q8ZLF9_SALTY | Q8ZLF9 from UniProtKB/TrEMBL  Length:253

    Alignment length:246
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247      
         Q8ZLF9_SALTY     8 LKVLFIGESWHIHMIHSKGYDSFTSSKYEEGATWLLECLRKGGVDIDYMPAHTVQIAFPESIDELNRYDVIVISDIGSNTFLLQNETFYQLKIKPNALESIKEYVKNGGGLLMIGGYLSFMGIEAKANYKNTVLAEVLPVIMLDGDDRVEKPEGICAEAVSPEHPVVNGFSDYPVFLGYNQAVARDDADVVLTINNDPLLVFGEYQQGKTACFMSDCSPHWGTQQFMSWPFYTDLWVNTLQFIARK 253
               SCOP domains d2gk3d_ D: Putative cytoplasmic protein STM3548                                                                                                                                                                                                        SCOP domains
               CATH domains 2gk3D00 D:8-253  [code=3.40.50.880, no name defined]                                                                                                                                                                                                   CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee.eeeeeeeeee..eeeeeeeeee.hhhhhhhhhh...eeeeehhhhhhhhh..hhhhhhh..eeeee..hhhhhhhhhhhhh......hhhhhhhhhhhh..eeeee.......hhhhh.hhhhh.hhhhh.eee.....eeeeeeeeeeee...............eeeeee.eee....eeeeee..eeeeeeeee..eeeeee.........hhhhhhh.hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2gk3 D   8 LKVLFIGESWHIHmIHSKGYDSFTSSKYEEGATWLLECLRKGGVDIDYmPAHTVQIAFPESIDELNRYDVIVISDIGSNTFLLQNETFYQLKIKPNALESIKEYVKNGGGLLmIGGYLSFmGIEAKANYKNTVLAEVLPVImLDGDDRVEKPEGICAEAVSPEHPVVNGFSDYPVFLGYNQAVARDDADVVLTINNDPLLVFGEYQQGKTACFmSDCSPHWGTQQFmSWPFYTDLWVNTLQFIARK 253
                                    17   |    27        37        47        57        67        77        87        97       107       117  |    127|      137       147 |     157       167       177       187       197       207       217   |   227      |237       247      
                                        21-MSE                             56-MSE                                                         120-MSE 128-MSE              149-MSE                                                                 221-MSE      234-MSE               


Chain E from PDB  Type:PROTEIN  Length:248
 aligned with Q8ZLF9_SALTY | Q8ZLF9 from UniProtKB/TrEMBL  Length:253

    Alignment length:248
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245        
         Q8ZLF9_SALTY     6 KKLKVLFIGESWHIHMIHSKGYDSFTSSKYEEGATWLLECLRKGGVDIDYMPAHTVQIAFPESIDELNRYDVIVISDIGSNTFLLQNETFYQLKIKPNALESIKEYVKNGGGLLMIGGYLSFMGIEAKANYKNTVLAEVLPVIMLDGDDRVEKPEGICAEAVSPEHPVVNGFSDYPVFLGYNQAVARDDADVVLTINNDPLLVFGEYQQGKTACFMSDCSPHWGTQQFMSWPFYTDLWVNTLQFIARK 253
               SCOP domains d2gk3e_ E: Putative cytoplasmic protein STM3548                                                                                                                                                                                                          SCOP domains
               CATH domains 2gk3E00 E:6-253  [code=3.40.50.880, no name defined]                                                                                                                                                                                                     CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee.eeeeeeeeee..eeeeeeeeee.hhhhhhhhhhh..eeeeehhhhhhhhh..hhhhhh...eeeee..hhhhhhhhhhhhh......hhhhhhhhhhhh..eeeee.......hhhhh.hhhhh.hhhhh.ee......eeeeeeeeeeee...............eeeeee..ee....eeeeee..eeeeeeeee..eeeeee.........hhhhhh..hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gk3 E   6 KKLKVLFIGESWHIHmIHSKGYDSFTSSKYEEGATWLLECLRKGGVDIDYmPAHTVQIAFPESIDELNRYDVIVISDIGSNTFLLQNETFYQLKIKPNALESIKEYVKNGGGLLmIGGYLSFmGIEAKANYKNTVLAEVLPVImLDGDDRVEKPEGICAEAVSPEHPVVNGFSDYPVFLGYNQAVARDDADVVLTINNDPLLVFGEYQQGKTACFmSDCSPHWGTQQFmSWPFYTDLWVNTLQFIARK 253
                                    15     |  25        35        45        55|       65        75        85        95       105       115    |  125  |    135       145   |   155       165       175       185       195       205       215     | 225       235       245        
                                          21-MSE                             56-MSE                                                         120-MSE 128-MSE              149-MSE                                                                 221-MSE      234-MSE               


Chain F from PDB  Type:PROTEIN  Length:246
 aligned with Q8ZLF9_SALTY | Q8ZLF9 from UniProtKB/TrEMBL  Length:253

    Alignment length:246
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247      
         Q8ZLF9_SALTY     8 LKVLFIGESWHIHMIHSKGYDSFTSSKYEEGATWLLECLRKGGVDIDYMPAHTVQIAFPESIDELNRYDVIVISDIGSNTFLLQNETFYQLKIKPNALESIKEYVKNGGGLLMIGGYLSFMGIEAKANYKNTVLAEVLPVIMLDGDDRVEKPEGICAEAVSPEHPVVNGFSDYPVFLGYNQAVARDDADVVLTINNDPLLVFGEYQQGKTACFMSDCSPHWGTQQFMSWPFYTDLWVNTLQFIARK 253
               SCOP domains d2gk3f_ F: Putative cytoplasmic protein STM3548                                                                                                                                                                                                        SCOP domains
               CATH domains 2gk3F00 F:8-253  [code=3.40.50.880, no name defined]                                                                                                                                                                                                   CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee.eeeeeeeeee..eeeeeeeeee.hhhhhhhhhhh..eeeeehhhhhhhhh..hhhhhh...eeeee..hhhhhhhhhhhhh......hhhhhhhhhhhh..eeeee.......hhhhh.hhhhh.hhhhh.eee.....eeeeeeeeeeee...............eeeeee.eee....eeeeee..eeeeeeeee..eeeeee.........hhhhhh..hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2gk3 F   8 LKVLFIGESWHIHmIHSKGYDSFTSSKYEEGATWLLECLRKGGVDIDYmPAHTVQIAFPESIDELNRYDVIVISDIGSNTFLLQNETFYQLKIKPNALESIKEYVKNGGGLLmIGGYLSFmGIEAKANYKNTVLAEVLPVImLDGDDRVEKPEGICAEAVSPEHPVVNGFSDYPVFLGYNQAVARDDADVVLTINNDPLLVFGEYQQGKTACFmSDCSPHWGTQQFmSWPFYTDLWVNTLQFIARK 253
                                    17   |    27        37        47        57        67        77        87        97       107       117  |    127|      137       147 |     157       167       177       187       197       207       217   |   227      |237       247      
                                        21-MSE                             56-MSE                                                         120-MSE 128-MSE              149-MSE                                                                 221-MSE      234-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 6)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2GK3)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2GK3)

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 Related Entries

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