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(-) Description

Title :  CRYSTAL STRUCTURE OF A PROTEIN OF UNKNOWN FUNCTION FROM SALMONELLA TYPHIMURIUM
 
Authors :  G. Minasov, L. Shuvalova, J. S. Brunzelle, I. I. Vorontsov, F. R. Collar A. Joachimiak, W. F. Anderson, Midwest Center For Structural Gen (Mcsg)
Date :  31 Mar 06  (Deposition) - 11 Apr 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.39
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,C,D,E,F  (1x)
Biol. Unit 2:  A,B,C,D,E,F  (2x)
Keywords :  Structural Genomics, Unknown Function, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Minasov, L. Shuvalova, J. S. Brunzelle, I. I. Vorontsov, F. R. Collart, W. F. Anderson
Crystal Structure Of A Hypothetical Protein From Salmonella Typhimurium
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE CYTOPLASMIC PROTEIN
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21-DE3
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: NP_463080
    Organism Scientific: SALMONELLA TYPHIMURIUM
    Organism Taxid: 602

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): ABCDEF
Biological Unit 2 (2x): ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 14)

Asymmetric Unit (2, 14)
No.NameCountTypeFull Name
1CA8Ligand/IonCALCIUM ION
2CL6Ligand/IonCHLORIDE ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2CL-1Ligand/IonCHLORIDE ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2CL-1Ligand/IonCHLORIDE ION

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN C:18 , PRO C:19 , ASP C:20BINDING SITE FOR RESIDUE CL C 152
02AC2SOFTWAREASN A:18 , ASP A:20 , HOH A:165 , HOH A:257 , HIS C:8BINDING SITE FOR RESIDUE CL A 152
03AC3SOFTWAREASN E:18 , PRO E:19 , ASP E:20 , HOH E:228BINDING SITE FOR RESIDUE CL E 152
04AC4SOFTWAREASN F:18 , PRO F:19 , ASP F:20BINDING SITE FOR RESIDUE CL F 152
05AC5SOFTWAREASN D:18 , PRO D:19 , ASP D:20 , HOH D:251 , HOH D:256BINDING SITE FOR RESIDUE CL D 152
06AC6SOFTWAREASN B:18 , PRO B:19 , ASP B:20 , HOH B:191 , HOH B:203BINDING SITE FOR RESIDUE CL B 152
07AC7SOFTWAREGLU A:16 , GLU C:16 , GLU E:16BINDING SITE FOR RESIDUE CA E 153
08AC8SOFTWAREGLU B:16 , GLU D:16 , GLU F:16 , HOH F:242BINDING SITE FOR RESIDUE CA D 153
09AC9SOFTWAREASN A:56 , HOH A:171 , HOH A:191 , ASN F:56 , HOH F:210BINDING SITE FOR RESIDUE CA A 153
10BC1SOFTWAREPRO C:19 , HOH C:154 , HOH C:155 , HOH C:156BINDING SITE FOR RESIDUE CA C 153
11BC2SOFTWAREPRO F:19BINDING SITE FOR RESIDUE CA F 153
12BC3SOFTWAREPRO A:19 , HOH A:262BINDING SITE FOR RESIDUE CA A 154
13BC4SOFTWAREPRO B:19 , HOH B:162 , HOH B:250 , HOH B:251BINDING SITE FOR RESIDUE CA B 153
14BC5SOFTWAREPRO D:19 , HOH D:249BINDING SITE FOR RESIDUE CA D 154

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2GJV)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2GJV)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2GJV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2GJV)

(-) Exons   (0, 0)

(no "Exon" information available for 2GJV)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:136
 aligned with Q8ZKJ0_SALTY | Q8ZKJ0 from UniProtKB/TrEMBL  Length:151

    Alignment length:136
                              1                                                                                                                                     
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128      
         Q8ZKJ0_SALTY     - --METLSVIHTVANRLRELNPDMDIHISSTDAKVYIPTGQQVTVLIHYCGSVFAEPENTDATVQKQLIRISATVIVPQISDAINALDRLRRSLGGIELPDCDRPLWLESEKYIGDAANFCRYALDMTASTLFIAEQ 134
               SCOP domains --d2gjva1 A:1-134 Putative cytoplasmic protein STM4215                                                                                   SCOP domains
               CATH domains 2gjvA00 A:-1-134 STM4215-like                                                                                                            CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhh..eeee...............eeeeeeeeeeee.........eeeeeeeeeeeeee.hhhhhhhhhhhhhhhhh...........eeeeeeeeehhhhheeeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gjv A  -1 NAMETLSVIHTVANRLRELNPDMDIHISSTDAKVYIPTGQQVTVLIHYCGSVFAEPENTDATVQKQLIRISATVIVPQISDAINALDRLRRSLGGIELPDCDRPLWLESEKYIGDAANFCRYALDMTASTLFIAEQ 134
                                     8        18        28        38        48        58        68        78        88        98       108       118       128      


Chain B from PDB  Type:PROTEIN  Length:136
 aligned with Q8ZKJ0_SALTY | Q8ZKJ0 from UniProtKB/TrEMBL  Length:151

    Alignment length:136
                              1                                                                                                                                     
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128      
         Q8ZKJ0_SALTY     - --METLSVIHTVANRLRELNPDMDIHISSTDAKVYIPTGQQVTVLIHYCGSVFAEPENTDATVQKQLIRISATVIVPQISDAINALDRLRRSLGGIELPDCDRPLWLESEKYIGDAANFCRYALDMTASTLFIAEQ 134
               SCOP domains d2gjvb_ B: Putative cytoplasmic protein STM4215                                                                                          SCOP domains
               CATH domains 2gjvB00 B:-1-134 STM4215-like                                                                                                            CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhh..eeeee..............eeeeeeeeeeee.........eeeeeeeeeeeeee.hhhhhhhhhhhhhhhhh...........eeeeeeeeehhhhheeeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gjv B  -1 NAMETLSVIHTVANRLRELNPDMDIHISSTDAKVYIPTGQQVTVLIHYCGSVFAEPENTDATVQKQLIRISATVIVPQISDAINALDRLRRSLGGIELPDCDRPLWLESEKYIGDAANFCRYALDMTASTLFIAEQ 134
                                     8        18        28        38        48        58        68        78        88        98       108       118       128      


Chain C from PDB  Type:PROTEIN  Length:136
 aligned with Q8ZKJ0_SALTY | Q8ZKJ0 from UniProtKB/TrEMBL  Length:151

    Alignment length:136
                              1                                                                                                                                     
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128      
         Q8ZKJ0_SALTY     - --METLSVIHTVANRLRELNPDMDIHISSTDAKVYIPTGQQVTVLIHYCGSVFAEPENTDATVQKQLIRISATVIVPQISDAINALDRLRRSLGGIELPDCDRPLWLESEKYIGDAANFCRYALDMTASTLFIAEQ 134
               SCOP domains d2gjvc_ C: Putative cytoplasmic protein STM4215                                                                                          SCOP domains
               CATH domains 2gjvC00 C:-1-134 STM4215-like                                                                                                            CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhh..eeee...............eeeeeeeeeeee.........eeeeeeeeeeeeee.hhhhhhhhhhhhhhhhh...........eeeeeeeeehhhhheeeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gjv C  -1 NAMETLSVIHTVANRLRELNPDMDIHISSTDAKVYIPTGQQVTVLIHYCGSVFAEPENTDATVQKQLIRISATVIVPQISDAINALDRLRRSLGGIELPDCDRPLWLESEKYIGDAANFCRYALDMTASTLFIAEQ 134
                                     8        18        28        38        48        58        68        78        88        98       108       118       128      


Chain D from PDB  Type:PROTEIN  Length:136
 aligned with Q8ZKJ0_SALTY | Q8ZKJ0 from UniProtKB/TrEMBL  Length:151

    Alignment length:136
                              1                                                                                                                                     
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128      
         Q8ZKJ0_SALTY     - --METLSVIHTVANRLRELNPDMDIHISSTDAKVYIPTGQQVTVLIHYCGSVFAEPENTDATVQKQLIRISATVIVPQISDAINALDRLRRSLGGIELPDCDRPLWLESEKYIGDAANFCRYALDMTASTLFIAEQ 134
               SCOP domains d2gjvd_ D: Putative cytoplasmic protein STM4215                                                                                          SCOP domains
               CATH domains 2gjvD00 D:-1-134 STM4215-like                                                                                                            CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhh...eeee...............eeeeeeeeeee.........eeeeeeeeeeeeee.hhhhhhhhhhhhhhhhh...........eeeeeeeeehhhhheeeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gjv D  -1 NAMETLSVIHTVANRLRELNPDMDIHISSTDAKVYIPTGQQVTVLIHYCGSVFAEPENTDATVQKQLIRISATVIVPQISDAINALDRLRRSLGGIELPDCDRPLWLESEKYIGDAANFCRYALDMTASTLFIAEQ 134
                                     8        18        28        38        48        58        68        78        88        98       108       118       128      


Chain E from PDB  Type:PROTEIN  Length:136
 aligned with Q8ZKJ0_SALTY | Q8ZKJ0 from UniProtKB/TrEMBL  Length:151

    Alignment length:136
                              1                                                                                                                                     
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128      
         Q8ZKJ0_SALTY     - --METLSVIHTVANRLRELNPDMDIHISSTDAKVYIPTGQQVTVLIHYCGSVFAEPENTDATVQKQLIRISATVIVPQISDAINALDRLRRSLGGIELPDCDRPLWLESEKYIGDAANFCRYALDMTASTLFIAEQ 134
               SCOP domains d2gjve_ E: Putative cytoplasmic protein STM4215                                                                                          SCOP domains
               CATH domains 2gjvE00 E:-1-134 STM4215-like                                                                                                            CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhh..eeeee..............eeeeeeeeeeee.........eeeeeeeeeeeeee.hhhhhhhhhhhhhhhhh...........eeeeeeeeehhhhheeeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gjv E  -1 NAMETLSVIHTVANRLRELNPDMDIHISSTDAKVYIPTGQQVTVLIHYCGSVFAEPENTDATVQKQLIRISATVIVPQISDAINALDRLRRSLGGIELPDCDRPLWLESEKYIGDAANFCRYALDMTASTLFIAEQ 134
                                     8        18        28        38        48        58        68        78        88        98       108       118       128      


Chain F from PDB  Type:PROTEIN  Length:136
 aligned with Q8ZKJ0_SALTY | Q8ZKJ0 from UniProtKB/TrEMBL  Length:151

    Alignment length:136
                              1                                                                                                                                     
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128      
         Q8ZKJ0_SALTY     - --METLSVIHTVANRLRELNPDMDIHISSTDAKVYIPTGQQVTVLIHYCGSVFAEPENTDATVQKQLIRISATVIVPQISDAINALDRLRRSLGGIELPDCDRPLWLESEKYIGDAANFCRYALDMTASTLFIAEQ 134
               SCOP domains d2gjvf_ F: Putative cytoplasmic protein STM4215                                                                                          SCOP domains
               CATH domains 2gjvF00 F:-1-134 STM4215-like                                                                                                            CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhh..eeee...............eeeeeeeeeeee.........eeeeeeeeeeeeee.hhhhhhhhhhhhhhhhh...........eeeeeeeeehhhhheeeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gjv F  -1 NAMETLSVIHTVANRLRELNPDMDIHISSTDAKVYIPTGQQVTVLIHYCGSVFAEPENTDATVQKQLIRISATVIVPQISDAINALDRLRRSLGGIELPDCDRPLWLESEKYIGDAANFCRYALDMTASTLFIAEQ 134
                                     8        18        28        38        48        58        68        78        88        98       108       118       128
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 6)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2GJV)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2GJV)

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  2gjv
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