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(-) Description

Title :  CRYSTAL STRUCTURE OF A CALCIUM-BINDING PROTEIN, REGUCALCIN (AGR_C_1268) FROM AGROBACTERIUM TUMEFACIENS STR. C58 AT 1.55 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  27 Mar 06  (Deposition) - 11 Apr 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.55
Chains :  Asym./Biol. Unit :  A
Keywords :  Regucalcin, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Calcium-Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Calcium-Binding Protein, Regucalcin (15155668) From Agrobacterium Tumefaciens At 1. 55 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - AGR_C_1268P
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: 15155668
    Organism Scientific: AGROBACTERIUM TUMEFACIENS STR. C58
    Organism Taxid: 176299
    Strain: C58 / ATCC 33970

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 9)

Asymmetric/Biological Unit (4, 9)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2EDO1Ligand/Ion1,2-ETHANEDIOL
3K1Ligand/IonPOTASSIUM ION
4MSE6Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:96 , GLU A:116 , LEU A:119 , ASN A:122 , HOH A:320 , HOH A:369BINDING SITE FOR RESIDUE K A 315
2AC2SOFTWAREMSE A:79 , ARG A:142 , LYS A:305 , HOH A:355BINDING SITE FOR RESIDUE CL A 316
3AC3SOFTWAREGLU A:40 , ARG A:123 , ASN A:125 , ASN A:170 , ASP A:221BINDING SITE FOR RESIDUE EDO A 317

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2GHS)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2GHS)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2GHS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2GHS)

(-) Exons   (0, 0)

(no "Exon" information available for 2GHS)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:295
 aligned with Q7D0W3_AGRFC | Q7D0W3 from UniProtKB/TrEMBL  Length:295

    Alignment length:295
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290     
         Q7D0W3_AGRFC     1 MATVFPFAGRVLDETPMLLGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIASDDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAREHLDDDAITANPQHGLTFELGIEVKGRFEPLYRL 295
               SCOP domains d2ghsa1 A:20-314 Regucalcin                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains 2ghsA00 A:20-314 TolB, C-terminal domain                                                                                                                                                                                                                                                                CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee....eeee......eeeeeee....eeeeee....eeeeee....eeeeee....eeeeeeee..eeeeee..eeeeee.....eeeee........eeeeeeee.....eeeeeee.......eeeeeee..eeeeeeeee..eeeeee.....eeeeee....eeeeee............eeeee......eeeeeee.....eeeeee...eeeee.....eeeeee.....eeeeeee.....eeeeee.....hhhhhhhh.....eee............... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ghs A  20 LATVFPFAGRVLDETPmLLGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHALPFmGSALAKISDSKQLIASDDGLFLRDTATGVLTLHAELESDLPGNRSNDGRmHPSGALWIGTmGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLmRVPLDARTGLPTGKAEVFIDSTGIKGGmDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAREHLDDDAITANPQHGLTFELGIEVKGRFEPLYRL 314
                                    29      | 39        49        59        69        79        89        99       109       119       129       139|      149       159       169       179       189  |    199       209       219|      229       239       249       259       269       279       289       299       309     
                                           36-MSE                                     79-MSE                                           129-MSE    140-MSE                                             192-MSE                     220-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2GHS)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2GHS)

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