2GGS - JenaLib

Title :   CRYSTAL STRUCTURE OF HYPOTHETICAL DTDP-4-DEHYDRORHAMNOSE REDUCTASE FROM SULFOLOBUS TOKODAII

Authors :   V. Rajakannan, T. Mizushima, A. Suzuki, R. Masui, S. Kuramitsu, T. Yamane

Date :   24 Mar 06 (Deposition) - 24 Mar 07 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.70

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Alpha, Beta, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   V. Rajakannan, T. Mizushima, A. Suzuki, R. Masui, S. Kuramitsu, T. Yamane
Crystal Structure Of Hypothetical Dtdp-4-Dehydrorhamnose Reductase From Sulfolobus Tokodaii
To Be Published
PubMed: search
(for further references see the PDB file header)

Compounds

Molecule 1 - 273AA LONG HYPOTHETICAL DTDP-4-DEHYDRORHAMNOSE REDUCTASE
	Chains	:	A, B
	EC Number	:	1.1.1.133
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Organism Scientific	:	SULFOLOBUS TOKODAII
	Organism Taxid	:	111955

Structural Features

Chains, Units

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (1, 2)

Asymmetric Unit (1, 2)

No.	Name	Count	Type	Full Name
1	NDP	2	Ligand/Ion	NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	NDP	1	Ligand/Ion	NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	NDP	1	Ligand/Ion	NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE

Sites (2, 2)

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLY A:7 , SER A:9 , GLY A:10 , GLN A:11 , LEU A:12 , ASN A:31 , SER A:32 , SER A:33 , LEU A:41 , ASP A:42 , LEU A:43 , ALA A:64 , ALA A:65 , ALA A:66 , THR A:68 , ILE A:83 , ILE A:105 , SER A:106 , THR A:107 , TYR A:130 , LYS A:134 , THR A:151 , GLY A:153 , ILE A:154 , LYS A:158 , HOH A:914 , HOH A:919 , HOH A:986 , HOH A:1013 , HOH A:1032 , HOH A:1048 , HOH A:1051 , HOH A:1119 , HOH A:1133 , HOH A:1134 , HOH A:1208 , HOH A:1220	BINDING SITE FOR RESIDUE NDP A 900
2	AC2	SOFTWARE	GLY B:7 , ALA B:8 , SER B:9 , GLY B:10 , GLN B:11 , LEU B:12 , TYR B:30 , ASN B:31 , SER B:32 , SER B:33 , LEU B:41 , LEU B:43 , ALA B:64 , ALA B:65 , ALA B:66 , THR B:68 , ILE B:105 , SER B:106 , THR B:107 , TYR B:130 , LYS B:134 , THR B:151 , SER B:152 , GLY B:153 , ILE B:154 , LYS B:158 , LYS B:257 , HOH B:910 , HOH B:975 , HOH B:986 , HOH B:1045 , HOH B:1046 , HOH B:1084	BINDING SITE FOR RESIDUE NDP B 901

SS Bonds (0, 0)

Cis Peptide Bonds (3, 3)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:273
 aligned with Q96Z61_SULTO | Q96Z61 from UniProtKB/TrEMBL  Length:273

    Alignment length:273
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270   
         Q96Z61_SULTO     1 MRTLITGASGQLGIELSRLLSERHEVIKVYNSSEIQGGYKLDLTDFPRLEDFIIKKRPDVIINAAAMTDVDKCEIEKEKAYKINAEAVRHIVRAGKVIDSYIVHISTDYVFDGEKGNYKEEDIPNPINYYGLSKLLGETFALQDDSLIIRTSGIFRNKGFPIYVYKTLKEGKTVFAFKGYYSPISARKLASAILELLELRKTGIIHVAGERISRFELALKIKEKFNLPGEVKEVDEVRGWIAKRPYDSSLDSSRARKILSTDFYTLDLDGMVV 273
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee...hhhhhhhhhhhh....eeeee........ee....hhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeee.hhh................hhhhhhhhhhhhhhh....eeeee.......hhhhhhhhhhhh...eeee..ee...hhhhhhhhhhhhhhhh..eeee.....eehhhhhhhhhhhh.....eeee.................hhhhhhhh.......hhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ggs A   1 MRTLITGASGQLGIELSRLLSERHEVIKVYNSSEIQGGYKLDLTDFPRLEDFIIKKRPDVIINAAAMTDVDKCEIEKEKAYKINAEAVRHIVRAGKVIDSYIVHISTDYVFDGEKGNYKEEDIPNPINYYGLSKLLGETFALQDDSLIIRTSGIFRNKGFPIYVYKTLKEGKTVFAFKGYYSPISARKLASAILELLELRKTGIIHVAGERISRFELALKIKEKFNLPGEVKEVDEVRGWIAKRPYDSSLDSSRARKILSTDFYTLDLDGMVV 273
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270

Chain B from PDB  Type:PROTEIN  Length:273
 aligned with Q96Z61_SULTO | Q96Z61 from UniProtKB/TrEMBL  Length:273

    Alignment length:273
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270   
         Q96Z61_SULTO     1 MRTLITGASGQLGIELSRLLSERHEVIKVYNSSEIQGGYKLDLTDFPRLEDFIIKKRPDVIINAAAMTDVDKCEIEKEKAYKINAEAVRHIVRAGKVIDSYIVHISTDYVFDGEKGNYKEEDIPNPINYYGLSKLLGETFALQDDSLIIRTSGIFRNKGFPIYVYKTLKEGKTVFAFKGYYSPISARKLASAILELLELRKTGIIHVAGERISRFELALKIKEKFNLPGEVKEVDEVRGWIAKRPYDSSLDSSRARKILSTDFYTLDLDGMVV 273
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee...hhhhhhhhhhhh....eeee...............hhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeee.hhh................hhhhhhhhhhhhhhh....eeeee..ee...hhhhhhhhhhh....eeee..ee..eehhhhhhhhhhhhhh...eeee.....eehhhhhhhhhhhhh....eeee.................hhhhhhhh.......hhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ggs B   1 MRTLITGASGQLGIELSRLLSERHEVIKVYNSSEIQGGYKLDLTDFPRLEDFIIKKRPDVIINAAAMTDVDKCEIEKEKAYKINAEAVRHIVRAGKVIDSYIVHISTDYVFDGEKGNYKEEDIPNPINYYGLSKLLGETFALQDDSLIIRTSGIFRNKGFPIYVYKTLKEGKTVFAFKGYYSPISARKLASAILELLELRKTGIIHVAGERISRFELALKIKEKFNLPGEVKEVDEVRGWIAKRPYDSSLDSSRARKILSTDFYTLDLDGMVV 273
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270

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Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (4, 4)

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Description