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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE THIOESTERASE (SSO2295) FROM SULFOLOBUS SOLFATARICUS AT 1.91 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  21 Mar 06  (Deposition) - 18 Apr 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.91
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (2x)
Biol. Unit 2:  C,D  (2x)
Keywords :  Putative Thioesterase, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Conserved Hypothetical Protein (13815598) From Sulfolobus Solfataricus At 1. 91 A Resolutio
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CONSERVED HYPOTHETICAL PROTEIN
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: 13815598
    Organism Scientific: SULFOLOBUS SOLFATARICUS
    Organism Taxid: 2287

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (2x): AB  
Biological Unit 2 (2x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 15)

Asymmetric Unit (3, 15)
No.NameCountTypeFull Name
1CA1Ligand/IonCALCIUM ION
2COA4Ligand/IonCOENZYME A
3MSE10Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (2, 16)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2COA4Ligand/IonCOENZYME A
3MSE12Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (2, 12)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2COA4Ligand/IonCOENZYME A
3MSE8Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECOA A:500 , HOH A:520 , COA C:500 , HOH C:522BINDING SITE FOR RESIDUE CA C 135
2AC2SOFTWAREILE A:59 , GLU A:61 , THR A:89 , ILE A:109 , ILE A:111 , ILE A:113 , TRP A:118 , SER A:120 , HOH A:501 , HOH A:520 , HOH A:522 , HOH A:539 , ILE B:22 , HIS B:24 , TYR B:25 , TYR B:66 , HIS B:67 , ARG B:68 , PRO B:69 , CA C:135 , COA C:500 , LYS D:88 , LYS D:119 , HOH D:520BINDING SITE FOR RESIDUE COA A 500
3AC3SOFTWAREALA A:23 , TYR A:25 , TYR A:66 , HIS A:67 , ARG A:68 , PRO A:69 , ILE B:59 , GLU B:61 , THR B:89 , ILE B:109 , TRP B:118 , SER B:120 , HOH B:502 , HOH B:513 , HOH B:553 , HOH B:572 , HOH B:575 , HOH D:546BINDING SITE FOR RESIDUE COA B 500
4AC4SOFTWARECOA A:500 , ILE C:22 , HIS C:24 , TYR C:25 , TYR C:28 , ILE C:59 , GLU C:61 , TYR C:66 , HIS C:67 , ARG C:68 , PRO C:69 , LYS C:88 , THR C:89 , ILE C:111 , TRP C:118 , SER C:120 , CA C:135 , HOH C:501 , HOH C:517 , HOH C:519 , HOH C:544 , HOH C:553 , HOH C:559 , COA D:500BINDING SITE FOR RESIDUE COA C 500
5AC5SOFTWARECOA C:500 , HOH C:519 , ILE D:22 , TYR D:25 , VAL D:58 , ILE D:59 , GLU D:61 , TYR D:66 , HIS D:67 , ARG D:68 , PRO D:69 , SER D:86 , THR D:89 , ILE D:109 , ILE D:111 , ILE D:113 , TRP D:118 , SER D:120 , HOH D:501 , HOH D:517BINDING SITE FOR RESIDUE COA D 500

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2GF6)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Tyr A:48 -Pro A:49
2Tyr B:48 -Pro B:49
3Tyr C:48 -Pro C:49
4Tyr D:48 -Pro D:49

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2GF6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2GF6)

(-) Exons   (0, 0)

(no "Exon" information available for 2GF6)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:134
 aligned with Q97WD2_SULSO | Q97WD2 from UniProtKB/TrEMBL  Length:134

    Alignment length:134
                                    10        20        30        40        50        60        70        80        90       100       110       120       130    
         Q97WD2_SULSO     1 MENIEYVFEDVVRIYDTDAQGIAHYAAYYRFFTNTIEKFIKEKVGIPYPIVNENLWFVIAESHAIYHRPVKLGDKLTVLLNPKILSNKTIKFEFKVLKDGELTTEGYVIQIAINPKIWKSTEMPKEIMDKLSIK 134
               SCOP domains d2gf6a1 A:1-134 Hypothetical protein SSO2295                                                                                           SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhh.eeeee.hhhhh......hhhhhhhhhhhhhhhhhhhhhh....eee..eeeeeeeeeeee........eeeeeeeeee....eeeeeeeeee..eeeeeeeeeeeeee....ee...hhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gf6 A   1 mENIEYVFEDVVRIYDTDAQGIAHYAAYYRFFTNTIEKFIKEKVGIPYPIVNENLWFVIAESHAIYHRPVKLGDKLTVLLNPKILSNKTIKFEFKVLKDGELTTEGYVIQIAINPKIWKSTEmPKEImDKLSIK 134
                            |       10        20        30        40        50        60        70        80        90       100       110       120  |    130    
                            |                                                                                                                       123-MSE|      
                            1-MSE                                                                                                                        128-MSE  


Chain B from PDB  Type:PROTEIN  Length:134
 aligned with Q97WD2_SULSO | Q97WD2 from UniProtKB/TrEMBL  Length:134

    Alignment length:134
                                    10        20        30        40        50        60        70        80        90       100       110       120       130    
         Q97WD2_SULSO     1 MENIEYVFEDVVRIYDTDAQGIAHYAAYYRFFTNTIEKFIKEKVGIPYPIVNENLWFVIAESHAIYHRPVKLGDKLTVLLNPKILSNKTIKFEFKVLKDGELTTEGYVIQIAINPKIWKSTEMPKEIMDKLSIK 134
               SCOP domains d2gf6b_ B: automated matches                                                                                                           SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhh.eeeee.hhhhh......hhhhhhhhhhhhhhhhhhhhh.....eee..eeeeeeeeeeee........eeeeeeeeee....eeeeeeeeee..eeeeeeeeeeeeee....ee...hhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gf6 B   1 mENIEYVFEDVVRIYDTDAQGIAHYAAYYRFFTNTIEKFIKEKVGIPYPIVNENLWFVIAESHAIYHRPVKLGDKLTVLLNPKILSNKTIKFEFKVLKDGELTTEGYVIQIAINPKIWKSTEmPKEImDKLSIK 134
                            |       10        20        30        40        50        60        70        80        90       100       110       120  |    130    
                            1-MSE                                                                                                                   123-MSE|      
                                                                                                                                                         128-MSE  


Chain C from PDB  Type:PROTEIN  Length:125
 aligned with Q97WD2_SULSO | Q97WD2 from UniProtKB/TrEMBL  Length:134

    Alignment length:125
                                    15        25        35        45        55        65        75        85        95       105       115       125     
         Q97WD2_SULSO     6 YVFEDVVRIYDTDAQGIAHYAAYYRFFTNTIEKFIKEKVGIPYPIVNENLWFVIAESHAIYHRPVKLGDKLTVLLNPKILSNKTIKFEFKVLKDGELTTEGYVIQIAINPKIWKSTEMPKEIMDK 130
               SCOP domains d2gf6c_ C: automated matches                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.hhhhh......hhhhhhhhhhhhhhhhhhhhh.....eee..eeeeeeeeeeee........eeeeeeeeeeee..eeeeeeeeee..eeeeeeeeeeeeee....ee...hhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gf6 C   6 YVFEDVVRIYDTDAQGIAHYAAYYRFFTNTIEKFIKEKVGIPYPIVNENLWFVIAESHAIYHRPVKLGDKLTVLLNPKILSNKTIKFEFKVLKDGELTTEGYVIQIAINPKIWKSTEmPKEImDK 130
                                    15        25        35        45        55        65        75        85        95       105       115       125  |  
                                                                                                                                               123-MSE|  
                                                                                                                                                    128-MSE


Chain D from PDB  Type:PROTEIN  Length:123
 aligned with Q97WD2_SULSO | Q97WD2 from UniProtKB/TrEMBL  Length:134

    Alignment length:123
                                    15        25        35        45        55        65        75        85        95       105       115       125   
         Q97WD2_SULSO     6 YVFEDVVRIYDTDAQGIAHYAAYYRFFTNTIEKFIKEKVGIPYPIVNENLWFVIAESHAIYHRPVKLGDKLTVLLNPKILSNKTIKFEFKVLKDGELTTEGYVIQIAINPKIWKSTEMPKEIM 128
               SCOP domains d2gf6d_ D: automated matches                                                                                                SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.hhhhh......hhhhhhhhhhhhhhhhhhhhhh....eee..eeeeeeeeeeee........eeeeeeeeee....eeeeeeeeee..eeeeeeeeeeeeee....ee........ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gf6 D   6 YVFEDVVRIYDTDAQGIAHYAAYYRFFTNTIEKFIKEKVGIPYPIVNENLWFVIAESHAIYHRPVKLGDKLTVLLNPKILSNKTIKFEFKVLKDGELTTEGYVIQIAINPKIWKSTEmPKEIm 128
                                    15        25        35        45        55        65        75        85        95       105       115       125  |
                                                                                                                                               123-MSE|
                                                                                                                                                    128-MSE
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2GF6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2GF6)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2GF6)

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