Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym.Unit - manually
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
collapse expand < >
Image Asym.Unit - manually
Asym.Unit - manually  (Jmol Viewer)
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)

(-) Description

Title :  THE 1,1-PROTON TRANSFER REACTION MECHANISM BY ALPHA-METHYLACYL-COA RACEMASE IS CATALYZED BY AN ASPARTATE/HISTIDINE PAIR AND INVOLVES A SMOOTH, METHIONINE-RICH SURFACE FOR BINDING THE FATTY ACYL MOIETY
 
Authors :  P. Bhaumik, R. K. Wierenga
Date :  15 Mar 06  (Deposition) - 20 Feb 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Alpha-Methylacyl-Coa Racemase, Racemase, Coa Transferase, Proton Transfer, Coenzyme A, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  P. Bhaumik, W. Schmitz, A. Hassinen, J. K. Hiltunen, E. Conzelmann, R. K. Wierenga
The Catalysis Of The 1, 1-Proton Transfer By Alpha-Methyl-Acyl-Coa Racemase Is Coupled To A Movement Of The Fatty Acyl Moiety Over A Hydrophobic, Methionine-Rich Surface
J. Mol. Biol. V. 367 1145 2007
PubMed-ID: 17320106  |  Reference-DOI: 10.1016/J.JMB.2007.01.062

(-) Compounds

Molecule 1 - PROBABLE ALPHA-METHYLACYL-COA RACEMASE MCR
    ChainsA, B, C, D
    EC Number5.1.99.4
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET3A
    Expression System StrainBL21(DE3)PLYSS
    Expression System Taxid562
    Expression System Vector TypePLASMID
    GeneCAB09031
    Organism ScientificMYCOBACTERIUM TUBERCULOSIS
    Organism Taxid1773
    Synonym2-METHYLACYL-COA RACEMASE, 2-ARYLPROPIONYL-COA EPIMERASE

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (1x)AB  
Biological Unit 2 (1x)  CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric Unit (2, 6)
No.NameCountTypeFull Name
1CAA4Ligand/IonACETOACETYL-COENZYME A
2GOL2Ligand/IonGLYCEROL
Biological Unit 1 (2, 3)
No.NameCountTypeFull Name
1CAA2Ligand/IonACETOACETYL-COENZYME A
2GOL1Ligand/IonGLYCEROL
Biological Unit 2 (2, 3)
No.NameCountTypeFull Name
1CAA2Ligand/IonACETOACETYL-COENZYME A
2GOL1Ligand/IonGLYCEROL

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:16 , ARG A:38 , ALA A:59 , LEU A:61 , LYS A:62 , GLY A:83 , TYR A:84 , ARG A:85 , VAL A:88 , ARG A:91 , LEU A:92 , GLY A:113 , ALA A:124 , GLY A:125 , HIS A:126 , ASP A:127 , TYR A:130 , ASP A:156 , HOH A:1801 , HOH A:1826 , HOH A:1887 , HOH A:1920 , HOH A:1992 , HOH A:1999 , HOH A:2016 , HOH A:2048 , HOH A:2143BINDING SITE FOR RESIDUE CAA A 1751
2AC2SOFTWAREILE B:16 , ARG B:38 , ALA B:59 , LEU B:61 , LYS B:62 , GLY B:83 , TYR B:84 , ARG B:85 , VAL B:88 , ARG B:91 , LEU B:92 , GLY B:113 , GLY B:125 , TYR B:130 , GOL B:2308 , HOH B:2350 , HOH B:2388 , HOH B:2402 , HOH B:2427 , HOH B:2451 , HOH B:2473 , HOH B:2505 , HOH B:2567 , HOH B:2613 , HOH B:2677BINDING SITE FOR RESIDUE CAA B 1752
3AC3SOFTWAREARG C:38 , ALA C:59 , ASP C:60 , LEU C:61 , LYS C:62 , GLY C:83 , TYR C:84 , ARG C:85 , VAL C:88 , ARG C:91 , LEU C:92 , GLY C:113 , GLY C:125 , TYR C:130 , ASP C:156 , GOL C:2307 , HOH C:2337 , HOH C:2367 , HOH C:2397 , HOH C:2434 , HOH C:2478 , HOH C:2499 , HOH C:2566 , HOH C:2642BINDING SITE FOR RESIDUE CAA C 1753
4AC4SOFTWAREILE D:16 , ARG D:38 , ALA D:59 , ASP D:60 , LEU D:61 , LYS D:62 , GLY D:83 , TYR D:84 , ARG D:85 , VAL D:88 , ARG D:91 , LEU D:92 , GLY D:113 , GLY D:125 , HIS D:126 , ASP D:127 , TYR D:130 , ASP D:156 , HOH D:1819 , HOH D:1830 , HOH D:1836 , HOH D:1872 , HOH D:1976 , HOH D:1987 , HOH D:2031 , HOH D:2045 , HOH D:2046 , HOH D:2083 , HOH D:2087 , HOH D:2141 , HOH D:2152BINDING SITE FOR RESIDUE CAA D 1754
5AC5SOFTWAREILE C:16 , HIS C:126 , ASP C:127 , ASP C:156 , CAA C:1753 , HOH C:2561 , LEU D:217 , ILE D:240BINDING SITE FOR RESIDUE GOL C 2307
6AC6SOFTWARETYR A:224 , ILE B:16 , HIS B:126 , ASP B:127 , ASP B:156 , CAA B:1752 , HOH B:2662BINDING SITE FOR RESIDUE GOL B 2308

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2GD2)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Ala A:331 -Pro A:332
2Ala B:331 -Pro B:332
3Ala C:331 -Pro C:332
4Ala D:331 -Pro D:332

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2GD2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2GD2)

(-) Exons   (0, 0)

(no "Exon" information available for 2GD2)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:354
 aligned with O06543_MYCTU | O06543 from UniProtKB/TrEMBL  Length:360

    Alignment length:359
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351         
         O06543_MYCTU     2 AGPLSGLRVVELAGIGPGPHAAMILGDLGADVVRIDRPSSVDGISRDAMLRNRRIVTADLKSDQGLELALKLIAKADVLIEGYRPGVTERLGLGPEECAKVNDRLIYARMTGWGQTGPRSQQAGHDINYISLNGILHAIGRGDERPVPPLNLVGDFGGGSMFLLVGILAALWERQSSGKGQVVDAAMVDGSSVLIQMMWAMRATGMWTDTRGANMLDGGAPYYDTYECADGRYVAVGAIEPQFYAAMLAGLGLDAAELPPQNDRARWPELRALLTEAFASHDRDHWGAVFANSDACVTPVLAFGEVHNEPHIIERNTFYEANGGWQPMPAPRFSRTASSQPRPPAATIDIEAVLTDWDG 360
               SCOP domains d2gd2a_ A: 2-methylacyl-CoA racemase M     cr                                                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeee...hhhhhhhhhhhhh..eeeeee..-----...hhhhh..eeee....hhhhhhhhhhhhh...eeee....hhhhhhh.hhhhhhhhh...eeeeee.............hhhhhhhh..hhhhh...................hhhhhhhhhhhhhhhhhhhh..eeeeeehhhhhhhhhhhhhhhhhh..................eeeee.....eeeee..hhhhhhhhhhhhh.hhhhh....hhhhhhhhhhhhhhhhh..hhhhhhhhh......eee..hhhhhhhhhhhhhhh.eee....eee....ee...............hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gd2 A   2 AGPLSGLRVVELAGIGPGPHAAMILGDLGADVVRIDRP-----ISRDAMLRNRRIVTADLKSDQGLELALKLIAKADVLIEGYRPGVTERLGLGPEECAKVNDRLIYARMTGWGQTGPRSQQAGHDINYISLNGILHAIGRGDERPVPPLNLVGDFGGGSMFLLVGILAALWERQSSGKGQVVDAAMVDGSSVLIQMMWAMRATGMWTDTRGANMLDGGAPYYDTYECADGRYVAVGAIEPQFYAAMLAGLGLDAAELPPQNDRARWPELRALLTEAFASHDRDHWGAVFANSDACVTPVLAFGEVHNEPHIIERNTFYEANGGWQPMPAPRFSRTASSQPRPPAATIDIEAVLTDWDG 360
                                    11        21        31       | -   |    51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351         
                                                                39    45                                                                                                                                                                                                                                                                                                                           

Chain B from PDB  Type:PROTEIN  Length:354
 aligned with O06543_MYCTU | O06543 from UniProtKB/TrEMBL  Length:360

    Alignment length:359
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351         
         O06543_MYCTU     2 AGPLSGLRVVELAGIGPGPHAAMILGDLGADVVRIDRPSSVDGISRDAMLRNRRIVTADLKSDQGLELALKLIAKADVLIEGYRPGVTERLGLGPEECAKVNDRLIYARMTGWGQTGPRSQQAGHDINYISLNGILHAIGRGDERPVPPLNLVGDFGGGSMFLLVGILAALWERQSSGKGQVVDAAMVDGSSVLIQMMWAMRATGMWTDTRGANMLDGGAPYYDTYECADGRYVAVGAIEPQFYAAMLAGLGLDAAELPPQNDRARWPELRALLTEAFASHDRDHWGAVFANSDACVTPVLAFGEVHNEPHIIERNTFYEANGGWQPMPAPRFSRTASSQPRPPAATIDIEAVLTDWDG 360
               SCOP domains d2gd2b_ B: 2-methylacyl-CoA racemase M     cr                                                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeee...hhhhhhhhhhhhh..eeeeee..-----...hhhhh..eeee....hhhhhhhhhhhhh...eeee....hhhhhhh.hhhhhhhhh...eeeeee.............hhhhhh....hhhhh...................hhhhhhhhhhhhhhhhhhhh..eeeeeehhhhhhhhhhhhhhhhhh..................eeeee.....eeeee..hhhhhhhhhhhhh.hhhhh....hhhhhhhhhhhhhhhhh..hhhhhhhhh......eeee.hhhhhhhhhhhhhhh.eeee..eeee....ee...............hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gd2 B   2 AGPLSGLRVVELAGIGPGPHAAMILGDLGADVVRIDRP-----ISRDAMLRNRRIVTADLKSDQGLELALKLIAKADVLIEGYRPGVTERLGLGPEECAKVNDRLIYARMTGWGQTGPRSQQAGHDINYISLNGILHAIGRGDERPVPPLNLVGDFGGGSMFLLVGILAALWERQSSGKGQVVDAAMVDGSSVLIQMMWAMRATGMWTDTRGANMLDGGAPYYDTYECADGRYVAVGAIEPQFYAAMLAGLGLDAAELPPQNDRARWPELRALLTEAFASHDRDHWGAVFANSDACVTPVLAFGEVHNEPHIIERNTFYEANGGWQPMPAPRFSRTASSQPRPPAATIDIEAVLTDWDG 360
                                    11        21        31       | -   |    51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351         
                                                                39    45                                                                                                                                                                                                                                                                                                                           

Chain C from PDB  Type:PROTEIN  Length:354
 aligned with O06543_MYCTU | O06543 from UniProtKB/TrEMBL  Length:360

    Alignment length:359
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351         
         O06543_MYCTU     2 AGPLSGLRVVELAGIGPGPHAAMILGDLGADVVRIDRPSSVDGISRDAMLRNRRIVTADLKSDQGLELALKLIAKADVLIEGYRPGVTERLGLGPEECAKVNDRLIYARMTGWGQTGPRSQQAGHDINYISLNGILHAIGRGDERPVPPLNLVGDFGGGSMFLLVGILAALWERQSSGKGQVVDAAMVDGSSVLIQMMWAMRATGMWTDTRGANMLDGGAPYYDTYECADGRYVAVGAIEPQFYAAMLAGLGLDAAELPPQNDRARWPELRALLTEAFASHDRDHWGAVFANSDACVTPVLAFGEVHNEPHIIERNTFYEANGGWQPMPAPRFSRTASSQPRPPAATIDIEAVLTDWDG 360
               SCOP domains d2gd2c_ C: 2-methylacyl-CoA racemase M     cr                                                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeee...hhhhhhhhhhhhh..eeeeee..-----...hhhhh..eeee....hhhhhhhhhhhhhh..eeee....hhhhhhh.hhhhhhh.....eeeeee.............hhhhhhhh..hhhhh...................hhhhhhhhhhhhhhhhhhhh..eeeeeehhhhhhhhhhhhhhhhhh..................eeeee.....eeeee..hhhhhhhhhhhhh.hhhhh....hhhhhhhhhhhhhhhhhh.hhhhhhhhh......eee..hhhhhhhhhhhhhhh.eee....eee....ee...............hhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gd2 C   2 AGPLSGLRVVELAGIGPGPHAAMILGDLGADVVRIDRP-----ISRDAMLRNRRIVTADLKSDQGLELALKLIAKADVLIEGYRPGVTERLGLGPEECAKVNDRLIYARMTGWGQTGPRSQQAGHDINYISLNGILHAIGRGDERPVPPLNLVGDFGGGSMFLLVGILAALWERQSSGKGQVVDAAMVDGSSVLIQMMWAMRATGMWTDTRGANMLDGGAPYYDTYECADGRYVAVGAIEPQFYAAMLAGLGLDAAELPPQNDRARWPELRALLTEAFASHDRDHWGAVFANSDACVTPVLAFGEVHNEPHIIERNTFYEANGGWQPMPAPRFSRTASSQPRPPAATIDIEAVLTDWDG 360
                                    11        21        31       | -   |    51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351         
                                                                39    45                                                                                                                                                                                                                                                                                                                           

Chain D from PDB  Type:PROTEIN  Length:354
 aligned with O06543_MYCTU | O06543 from UniProtKB/TrEMBL  Length:360

    Alignment length:359
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351         
         O06543_MYCTU     2 AGPLSGLRVVELAGIGPGPHAAMILGDLGADVVRIDRPSSVDGISRDAMLRNRRIVTADLKSDQGLELALKLIAKADVLIEGYRPGVTERLGLGPEECAKVNDRLIYARMTGWGQTGPRSQQAGHDINYISLNGILHAIGRGDERPVPPLNLVGDFGGGSMFLLVGILAALWERQSSGKGQVVDAAMVDGSSVLIQMMWAMRATGMWTDTRGANMLDGGAPYYDTYECADGRYVAVGAIEPQFYAAMLAGLGLDAAELPPQNDRARWPELRALLTEAFASHDRDHWGAVFANSDACVTPVLAFGEVHNEPHIIERNTFYEANGGWQPMPAPRFSRTASSQPRPPAATIDIEAVLTDWDG 360
               SCOP domains d2gd2d_ D: 2-methylacyl-CoA racemase M     cr                                                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeee...hhhhhhhhhhhhh..eeeeee..-----...hhhhh..eeee....hhhhhhhhhhhhh...eeee....hhhhhhh.hhhhhhhhh...eeeeee.............hhhhhh....hhhhh...................hhhhhhhhhhhhhhhhhhhh...eeeeehhhhhhhhhhhhhhhhhh..................eeeee.....eeeee..hhhhhhhhhhhhh.hhhhh....hhhhhhhhhhhhhhhhh..hhhhhhhhhh.....eee..hhhhhhhhhhhhhh..eee....eee....ee...............hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gd2 D   2 AGPLSGLRVVELAGIGPGPHAAMILGDLGADVVRIDRP-----ISRDAMLRNRRIVTADLKSDQGLELALKLIAKADVLIEGYRPGVTERLGLGPEECAKVNDRLIYARMTGWGQTGPRSQQAGHDINYISLNGILHAIGRGDERPVPPLNLVGDFGGGSMFLLVGILAALWERQSSGKGQVVDAAMVDGSSVLIQMMWAMRATGMWTDTRGANMLDGGAPYYDTYECADGRYVAVGAIEPQFYAAMLAGLGLDAAELPPQNDRARWPELRALLTEAFASHDRDHWGAVFANSDACVTPVLAFGEVHNEPHIIERNTFYEANGGWQPMPAPRFSRTASSQPRPPAATIDIEAVLTDWDG 360
                                    11        21        31       | -   |    51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351         
                                                                39    45                                                                                                                                                                                                                                                                                                                           

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2GD2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2GD2)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (O06543_MYCTU | O06543)
molecular function
    GO:0008111    alpha-methylacyl-CoA racemase activity    Catalysis of the reaction: (2S)-2-methylacyl-CoA = (2R)-2-methylacyl-CoA.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0042803    protein homodimerization activity    Interacting selectively and non-covalently with an identical protein to form a homodimer.
biological process
    GO:0006637    acyl-CoA metabolic process    The chemical reactions and pathways involving acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with an acyl group.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    CAA  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    GOL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Ala A:331 - Pro A:332   [ RasMol ]  
    Ala B:331 - Pro B:332   [ RasMol ]  
    Ala C:331 - Pro C:332   [ RasMol ]  
    Ala D:331 - Pro D:332   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  2gd2
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  O06543_MYCTU | O06543
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  5.1.99.4
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  O06543_MYCTU | O06543
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        O06543_MYCTU | O065431x74 2gce 2gci 2gd0 2gd6 2yim

(-) Related Entries Specified in the PDB File

1x74 STRUCTURE OF UNLIGANDED ALPHA-METHYLACYL-COA RACEMASE
2gce
2gci
2gd0
2gd6