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(-) Description

Title :  CRYSTAL STRUCTURE OF ASPARTATE AMINOTRANSFERASE (TM1698) FROM THERMOTOGA MARITIMA AT 2.50 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  09 Mar 06  (Deposition) - 21 Mar 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Keywords :  Tm1698, Aspartate Aminotransferase, Structural Genomics, Psi, Protein Structure Initiative, Joint Center For Structural Genomics, Jcsg, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Aspartate Aminotransferase (Tm1698) From Thermotoga Maritima At 2. 50 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ASPARTATE AMINOTRANSFERASE
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: TM1698
    Organism Scientific: THERMOTOGA MARITIMA
    Organism Taxid: 2336

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): AB    
Biological Unit 2 (1x):   CD  
Biological Unit 3 (1x):     EF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 63)

Asymmetric Unit (2, 63)
No.NameCountTypeFull Name
1LLP6Mod. Amino Acid2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)
2MSE57Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (2, 21)
No.NameCountTypeFull Name
1LLP2Mod. Amino Acid2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)
2MSE19Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (2, 21)
No.NameCountTypeFull Name
1LLP2Mod. Amino Acid2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)
2MSE19Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (2, 21)
No.NameCountTypeFull Name
1LLP2Mod. Amino Acid2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)
2MSE19Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 2GB3)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2GB3)

(-) Cis Peptide Bonds  (18, 18)

Asymmetric Unit
No.Residues
1Glu A:121 -Pro A:122
2Asn A:170 -Pro A:171
3Asn A:173 -Pro A:174
4Glu B:121 -Pro B:122
5Asn B:170 -Pro B:171
6Asn B:173 -Pro B:174
7Glu C:121 -Pro C:122
8Asn C:170 -Pro C:171
9Asn C:173 -Pro C:174
10Glu D:121 -Pro D:122
11Asn D:170 -Pro D:171
12Asn D:173 -Pro D:174
13Glu E:121 -Pro E:122
14Asn E:170 -Pro E:171
15Asn E:173 -Pro E:174
16Glu F:121 -Pro F:122
17Asn F:170 -Pro F:171
18Asn F:173 -Pro F:174

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2GB3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2GB3)

(-) Exons   (0, 0)

(no "Exon" information available for 2GB3)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:389
 aligned with Q9X224_THEMA | Q9X224 from UniProtKB/TrEMBL  Length:397

    Alignment length:389
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383         
         Q9X224_THEMA     4 FSDRVLLTEESPIRKLVPFAEMAKKRGVRIHHLNIGQPDLKTPEVFFERIYENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAIPQNLESFINERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFSACGARVGCLITRNEELISHAMKLAQGRLAPPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEHGLKRFTKPSGAFYITAELPVEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRAIDVLMEGLKMFCS 392
               SCOP domains d2gb3a1 A:4-392 AAT homologue TM1698                                                                                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhh.....hhhhhhhhhhhhhh..eeee...........hhhhhhhhhh............hhhhhhhhhhhhhhh.....hhh.eeeehhhhhhhhhhhhhhh....eeeeee...hhhhhhhhhhh.eeeeee.hhhhh.....hhhhhh...eeeeeee..........hhhhhhhhhhhhhhh..eeeee.............hhhhh....eeeeee......hhhhh.eeee..hhhhhhhhhhhhhhh...hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh............eeeee....hhhhhhhhhhhh.hhh.eeee.ee.hhhh........eeeee...hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gb3 A   4 FSDRVLLTEESPIRKLVPFAEmAKKRGVRIHHLNIGQPDLKTPEVFFERIYENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRmEEGFAIPQNLESFINERTKGIVLSNPCNPTGVVYGKDEmRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSkKFSACGARVGCLITRNEELISHAmKLAQGRLAPPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEHGLKRFTKPSGAFYITAELPVEDAEEFARWmLTDFNmDGETTmVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRAIDVLmEGLKmFCS 392
                                    13        23 |      33        43        53        63        73        83        93       103       113       123       133       143 |     153       163       173       183|      193       203       213       223       233       243       253  |    263       273       283       293       303       313       323       333 |     343   |   353       363       373       383|    |   
                                                25-MSE                                                                                                                 145-MSE                                184-MSE                                         232-LLP                 256-MSE                                                                        335-MSE |     |                                  384-MSE|   
                                                                                                                                                                                                                                                                                                                                                                           341-MSE |                                       389-MSE
                                                                                                                                                                                                                                                                                                                                                                                 347-MSE                                         


Chain B from PDB  Type:PROTEIN  Length:394
 aligned with Q9X224_THEMA | Q9X224 from UniProtKB/TrEMBL  Length:397

    Alignment length:394
                              1                                                                                                                                                                                                                                                                                                                                                                                                       
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388    
         Q9X224_THEMA     - --MDVFSDRVLLTEESPIRKLVPFAEMAKKRGVRIHHLNIGQPDLKTPEVFFERIYENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAIPQNLESFINERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFSACGARVGCLITRNEELISHAMKLAQGRLAPPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEHGLKRFTKPSGAFYITAELPVEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRAIDVLMEGLKMFCS 392
               SCOP domains d2gb3b_ B: AAT homologue TM1698                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhh.....hhhhhhhhhhhhhh..eeee...........hhhhhhhhhh............hhhhhhhhhhhhhhh.....hhh.eeeehhhhhhhhhhhhhhh....eeeeee...hhhhhhhhhhh.eeeeee.hhhhh.....hhhhhh...eeeeeee..........hhhhhhhhhhhhhhh..eeeee.............hhhhh....eeeeee......hhhhh.eeeee.hhhhhhhhhhhhhhh...hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh............eeeee....hhhhhhhhhhhh.hhh.eeee.ee.hhhh........eeeee...hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gb3 B  -1 HHmDVFSDRVLLTEESPIRKLVPFAEmAKKRGVRIHHLNIGQPDLKTPEVFFERIYENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRmEEGFAIPQNLESFINERTKGIVLSNPCNPTGVVYGKDEmRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSkKFSACGARVGCLITRNEELISHAmKLAQGRLAPPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEHGLKRFTKPSGAFYITAELPVEDAEEFARWmLTDFNmDGETTmVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRAIDVLmEGLKmFCS 392
                              |      8        18      | 28        38        48        58        68        78        88        98       108       118       128       138      |148       158       168       178     | 188       198       208       218       228   |   238       248       258       268       278       288       298       308       318       328      |338  |    348       358       368       378     | 388|   
                              1-MSE                  25-MSE                                                                                                                 145-MSE                                184-MSE                                         232-LLP                 256-MSE                                                                        335-MSE |     |                                  384-MSE|   
                                                                                                                                                                                                                                                                                                                                                                                341-MSE |                                       389-MSE
                                                                                                                                                                                                                                                                                                                                                                                      347-MSE                                         


Chain C from PDB  Type:PROTEIN  Length:391
 aligned with Q9X224_THEMA | Q9X224 from UniProtKB/TrEMBL  Length:397

    Alignment length:391
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391 
         Q9X224_THEMA     2 DVFSDRVLLTEESPIRKLVPFAEMAKKRGVRIHHLNIGQPDLKTPEVFFERIYENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAIPQNLESFINERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFSACGARVGCLITRNEELISHAMKLAQGRLAPPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEHGLKRFTKPSGAFYITAELPVEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRAIDVLMEGLKMFCS 392
               SCOP domains d2gb3c_ C: AAT homologue TM1698                                                                                                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhh.....hhhhhhhhhhhhhh..eeee..........hhhhhhhhhhh............hhhhhhhhhhhhhhh.....hhh.eeeehhhhhhhhhhhhhhh....eeeeee...hhhhhhhhhhh.eeeeee.hhhhh.....hhhhhh...eeeeeee..........hhhhhhhhhhhhhhh..eeeee.............hhhhh....eeeeee......hhhhh.eeeee.hhhhhhhhhhhhhhh...hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh............eeeee....hhhhhhhhhhhh.hhh.eeee.ee.hhhh........eeeee...hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gb3 C   2 DVFSDRVLLTEESPIRKLVPFAEmAKKRGVRIHHLNIGQPDLKTPEVFFERIYENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRmEEGFAIPQNLESFINERTKGIVLSNPCNPTGVVYGKDEmRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSkKFSACGARVGCLITRNEELISHAmKLAQGRLAPPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEHGLKRFTKPSGAFYITAELPVEDAEEFARWmLTDFNmDGETTmVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRAIDVLmEGLKmFCS 392
                                    11        21   |    31        41        51        61        71        81        91       101       111       121       131       141   |   151       161       171       181  |    191       201       211       221       231|      241       251    |  261       271       281       291       301       311       321       331   |   341     | 351       361       371       381  |    391 
                                                  25-MSE                                                                                                                 145-MSE                                184-MSE                                         232-LLP                 256-MSE                                                                        335-MSE |     |                                  384-MSE|   
                                                                                                                                                                                                                                                                                                                                                                             341-MSE |                                       389-MSE
                                                                                                                                                                                                                                                                                                                                                                                   347-MSE                                         


Chain D from PDB  Type:PROTEIN  Length:390
 aligned with Q9X224_THEMA | Q9X224 from UniProtKB/TrEMBL  Length:397

    Alignment length:390
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390
         Q9X224_THEMA     1 MDVFSDRVLLTEESPIRKLVPFAEMAKKRGVRIHHLNIGQPDLKTPEVFFERIYENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAIPQNLESFINERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFSACGARVGCLITRNEELISHAMKLAQGRLAPPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEHGLKRFTKPSGAFYITAELPVEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRAIDVLMEGLKMF 390
               SCOP domains d2gb3d_ D: AAT homologue TM1698                                                                                                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhh.....hhhhhhhhhhhhhh..eeee..........hhhhhhhhhhh............hhhhhhhhhhhhhhh.....hhh.eeeehhhhhhhhhhhhhhh....eeeeee...hhhhhhhhhhh.eeeeee.hhhhh.....hhhhhh...eeeeeee..........hhhhhhhhhhhhhhh..eeeee.............hhhhh....eeeeee......hhhhh.eeeee.hhhhhhhhhhhhhhh...hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh............eeeee....hhhhhhhhhhhh.hhh.eeee.ee.hhhh........eeeee...hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2gb3 D   1 mDVFSDRVLLTEESPIRKLVPFAEmAKKRGVRIHHLNIGQPDLKTPEVFFERIYENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRmEEGFAIPQNLESFINERTKGIVLSNPCNPTGVVYGKDEmRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSkKFSACGARVGCLITRNEELISHAmKLAQGRLAPPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEHGLKRFTKPSGAFYITAELPVEDAEEFARWmLTDFNmDGETTmVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRAIDVLmEGLKmF 390
                            |       10        20    |   30        40        50        60        70        80        90       100       110       120       130       140    |  150       160       170       180   |   190       200       210       220       230 |     240       250     | 260       270       280       290       300       310       320       330    |  340|     |350       360       370       380   |   390
                            |                      25-MSE                                                                                                                 145-MSE                                184-MSE                                         232-LLP                 256-MSE                                                                        335-MSE |     |                                  384-MSE| 
                            1-MSE                                                                                                                                                                                                                                                                                                                                             341-MSE |                                       389-MSE
                                                                                                                                                                                                                                                                                                                                                                                    347-MSE                                       


Chain E from PDB  Type:PROTEIN  Length:393
 aligned with Q9X224_THEMA | Q9X224 from UniProtKB/TrEMBL  Length:397

    Alignment length:393
                              1                                                                                                                                                                                                                                                                                                                                                                                                      
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388   
         Q9X224_THEMA     - --MDVFSDRVLLTEESPIRKLVPFAEMAKKRGVRIHHLNIGQPDLKTPEVFFERIYENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAIPQNLESFINERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFSACGARVGCLITRNEELISHAMKLAQGRLAPPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEHGLKRFTKPSGAFYITAELPVEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRAIDVLMEGLKMFC 391
               SCOP domains d2gb3e_ E: AAT homologue TM1698                                                                                                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhh.....hhhhhhhhhhhhhh..eeee...........hhhhhhhhhh............hhhhhhhhhhhhhhh.....hhh.eeeehhhhhhhhhhhhhhh....eeeeee...hhhhhhhhhhh.eeeeee.hhhhh.....hhhhhh...eeeeeee..........hhhhhhhhhhhhhhh..eeeee.............hhhhh....eeeeee......hhhhh.eeee..hhhhhhhhhhhhhhh...hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh............eeeee....hhhhhhhhhhhh.hhh.eeee.ee.hhhh........eeeee...hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gb3 E  -1 HHmDVFSDRVLLTEESPIRKLVPFAEmAKKRGVRIHHLNIGQPDLKTPEVFFERIYENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRmEEGFAIPQNLESFINERTKGIVLSNPCNPTGVVYGKDEmRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSkKFSACGARVGCLITRNEELISHAmKLAQGRLAPPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEHGLKRFTKPSGAFYITAELPVEDAEEFARWmLTDFNmDGETTmVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRAIDVLmEGLKmFC 391
                              |      8        18      | 28        38        48        58        68        78        88        98       108       118       128       138      |148       158       168       178     | 188       198       208       218       228   |   238       248       258       268       278       288       298       308       318       328      |338  |    348       358       368       378     | 388|  
                              |                      25-MSE                                                                                                                 145-MSE                                184-MSE                                         232-LLP                 256-MSE                                                                        335-MSE |     |                                  384-MSE|  
                              1-MSE                                                                                                                                                                                                                                                                                                                                             341-MSE |                                       389-MSE
                                                                                                                                                                                                                                                                                                                                                                                      347-MSE                                        


Chain F from PDB  Type:PROTEIN  Length:389
 aligned with Q9X224_THEMA | Q9X224 from UniProtKB/TrEMBL  Length:397

    Alignment length:389
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382         
         Q9X224_THEMA     3 VFSDRVLLTEESPIRKLVPFAEMAKKRGVRIHHLNIGQPDLKTPEVFFERIYENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAIPQNLESFINERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFSACGARVGCLITRNEELISHAMKLAQGRLAPPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEHGLKRFTKPSGAFYITAELPVEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRAIDVLMEGLKMFC 391
               SCOP domains d2gb3f_ F: AAT homologue TM1698                                                                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhh.....hhhhhhhhhhhhhh..eeee...........hhhhhhhhhh............hhhhhhhhhhhhhhh.....hhh.eeeehhhhhhhhhhhhhhh....eeeeee...hhhhhhhhhhh.eeeeee.hhhhh.....hhhhhh...eeeeeee..........hhhhhhhhhhhhhhh..eeeee.............hhhhh....eeeeee......hhhhh.eeeee.hhhhhhhhhhhhhhh...hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh............eeeee....hhhhhhhhhhhh.hhh.eeee.ee.hhhh........eeeee...hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gb3 F   3 VFSDRVLLTEESPIRKLVPFAEmAKKRGVRIHHLNIGQPDLKTPEVFFERIYENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRmEEGFAIPQNLESFINERTKGIVLSNPCNPTGVVYGKDEmRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSkKFSACGARVGCLITRNEELISHAmKLAQGRLAPPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEHGLKRFTKPSGAFYITAELPVEDAEEFARWmLTDFNmDGETTmVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRAIDVLmEGLKmFC 391
                                    12        22  |     32        42        52        62        72        82        92       102       112       122       132       142  |    152       162       172       182 |     192       202       212       222       232       242       252   |   262       272       282       292       302       312       322       332  |    342    |  352       362       372       382 |    |  
                                                 25-MSE                                                                                                                 145-MSE                                184-MSE                                         232-LLP                 256-MSE                                                                        335-MSE |     |                                  384-MSE|  
                                                                                                                                                                                                                                                                                                                                                                            341-MSE |                                       389-MSE
                                                                                                                                                                                                                                                                                                                                                                                  347-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

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(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (Q9X224_THEMA | Q9X224)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0030170    pyridoxal phosphate binding    Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
    GO:0008483    transaminase activity    Catalysis of the transfer of an amino group to an acceptor, usually a 2-oxo acid.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0009058    biosynthetic process    The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.

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 Related Entries

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