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(-) Description

Title :  STRUCTURE OF PROTEIN OF UNKNOWN FUNCTION ATU0240 FROM AGROBACTERIIUM TUMERFACIENCS STR. C58
 
Authors :  T. A. Binkowski, E. Evdokimova, M. Kudritska, A. Edwards, A. Joachimia Center For Structural Genomics (Mcsg)
Date :  09 Mar 06  (Deposition) - 09 May 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  B  (2x)
Biol. Unit 4:  A  (2x)
Keywords :  Mcsg, Structural Genomics, Agrobacterium Tumfaciens, Hypothetical Protein, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. A. Binkowski, E. Evdokimova, M. Kudritska, A. Edwards, A. Joachimiak
Hypothetical Protein Atu0240 From Agrobacteriium Tumerfaciencs Str. C58
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN ATU0240
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET15B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: ATU0240
    Organism Scientific: AGROBACTERIUM TUMEFACIENS STR. C58
    Organism Taxid: 176299
    Strain: C58

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B
Biological Unit 3 (2x):  B
Biological Unit 4 (2x): A 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 12)

Asymmetric Unit (2, 12)
No.NameCountTypeFull Name
1MSE10Mod. Amino AcidSELENOMETHIONINE
2PO42Ligand/IonPHOSPHATE ION
Biological Unit 1 (2, 6)
No.NameCountTypeFull Name
1MSE5Mod. Amino AcidSELENOMETHIONINE
2PO41Ligand/IonPHOSPHATE ION
Biological Unit 2 (2, 6)
No.NameCountTypeFull Name
1MSE5Mod. Amino AcidSELENOMETHIONINE
2PO41Ligand/IonPHOSPHATE ION
Biological Unit 3 (2, 12)
No.NameCountTypeFull Name
1MSE10Mod. Amino AcidSELENOMETHIONINE
2PO42Ligand/IonPHOSPHATE ION
Biological Unit 4 (2, 12)
No.NameCountTypeFull Name
1MSE10Mod. Amino AcidSELENOMETHIONINE
2PO42Ligand/IonPHOSPHATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:2 , ASP A:3 , THR A:4 , ARG A:118 , HOH A:4387BINDING SITE FOR RESIDUE PO4 A 4285
2AC2SOFTWAREPHE B:2 , ASP B:3 , THR B:4 , ARG B:118 , HOH B:4390BINDING SITE FOR RESIDUE PO4 B 4286

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2GAX)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2GAX)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2GAX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2GAX)

(-) Exons   (0, 0)

(no "Exon" information available for 2GAX)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:135
 aligned with A9CKI6_AGRFC | A9CKI6 from UniProtKB/TrEMBL  Length:135

    Alignment length:135
                                    10        20        30        40        50        60        70        80        90       100       110       120       130     
         A9CKI6_AGRFC     1 MFDTKIAVILRDDLAVWQKLNVTAFLMSGIVAQTGEIIGEPYRDGAGNVYNPLSIQPIVVMATDQEALRKIHQRSLERDITTSLYIEEMFATGHDAANRQVFSHFSPDTAKVVGMALRADRKIVDKITKGAKLHA 135
               SCOP domains d2gaxa1 A:1-135 Hypothetical protein Atu0240                                                                                            SCOP domains
               CATH domains -2gaxA00 A:2-135 Bit1                                                                                                                   CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhh...ee.....ee.......eeeeeehhhhhhhhhhhhhhh....eeee.hhhhh.hhhhhhhhhh........eeeeeeeeehhhhhhhh...ee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gax A   1 mFDTKIAVILRDDLAVWQKLNVTAFLmSGIVAQTGEIIGEPYRDGAGNVYNPLSIQPIVVmATDQEALRKIHQRSLERDITTSLYIEEmFATGHDAANRQVFSHFSPDTAKVVGmALRADRKIVDKITKGAKLHA 135
                            |       10        20      | 30        40        50        60|       70        80        90       100       110    |  120       130     
                            |                        27-MSE                            61-MSE                      89-MSE                   115-MSE                
                            1-MSE                                                                                                                                  


Chain B from PDB  Type:PROTEIN  Length:135
 aligned with A9CKI6_AGRFC | A9CKI6 from UniProtKB/TrEMBL  Length:135

    Alignment length:135
                                    10        20        30        40        50        60        70        80        90       100       110       120       130     
         A9CKI6_AGRFC     1 MFDTKIAVILRDDLAVWQKLNVTAFLMSGIVAQTGEIIGEPYRDGAGNVYNPLSIQPIVVMATDQEALRKIHQRSLERDITTSLYIEEMFATGHDAANRQVFSHFSPDTAKVVGMALRADRKIVDKITKGAKLHA 135
               SCOP domains d2gaxb_ B: Hypothetical protein Atu0240                                                                                                 SCOP domains
               CATH domains -2gaxB00 B:2-135 Bit1                                                                                                                   CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhh...ee.....ee.......eeeeeehhhhhhhhhhhhhhh....eeee.hhhhh.hhhhhhhhhh........eeeeeeeeehhhhhhhhh..ee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gax B   1 mFDTKIAVILRDDLAVWQKLNVTAFLmSGIVAQTGEIIGEPYRDGAGNVYNPLSIQPIVVmATDQEALRKIHQRSLERDITTSLYIEEmFATGHDAANRQVFSHFSPDTAKVVGmALRADRKIVDKITKGAKLHA 135
                            |       10        20      | 30        40        50        60|       70        80        90       100       110    |  120       130     
                            1-MSE                    27-MSE                            61-MSE                      89-MSE                   115-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2GAX)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2GAX)

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