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(-) Description

Title :  CRYSTAL STRUCTURE OF SUCCINYLGLUTAMATE DESUCCINYLASE FROM VIBRIO CHOLERAE, NORTHEAST STRUCTURAL GENOMICS TARGET VCR20
 
Authors :  W. Zhou, S. Jayaraman, F. Forouhar, K. Conover, X. Rong, T. B. Acton, G. T. Montelione, L. Tong, J. F. Hunt, Northeast Structural Genomic Consortium (Nesg)
Date :  06 Mar 06  (Deposition) - 11 Apr 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Alpha-Beta Protein, Structural Genomics, Psi, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. Zhou, S. Jayaraman, F. Forouhar, K. Conover, X. Rong, T. B. Acton, G. T. Montelione, L. Tong, J. F. Hunt
Crystal Structure Of Succinylglutamate Desuccinylase From Vibrio Cholerae, Northeast Structural Genomics Target Vcr20
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - SUCCINYLGLUTAMATE DESUCCINYLASE
    Chains: A
    EC Number: 3.1.-.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21
    Expression System Strain: BL21(DE3)+MAGIC
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: VIBRIO CHOLERAE
    Organism Taxid: 345072
    Strain: MO10

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 11)

Asymmetric/Biological Unit (1, 11)
No.NameCountTypeFull Name
1MSE11Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 2G9D)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2G9D)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2G9D)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2G9D)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2G9D)

(-) Exons   (0, 0)

(no "Exon" information available for 2G9D)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:340
 aligned with ASTE_VIBCH | Q9KSL4 from UniProtKB/Swiss-Prot  Length:342

    Alignment length:340
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342
           ASTE_VIBCH     3 KSLFRQSFLFDSLDLDHPMVAQTVRTEQGVTLKLHQRGVLEVIPAQTDAATKNMVISCGIHGDETAPMELLDKWIDDIVSGFQPVAERCLFIMAHPQATVRHVRFIEQNLNRLFDDKPHTPSTELAIADNLKVLLRQFFANTDEHSRWHLDLHCAIRGSKHYSFAVSPKARHPVRSRSLMQFIEQAHIEAVMLSNAPSSTFSWYSAEHYAAQALTLELGQVARLGENLLDRLLAFDLAMRDLISRHKPEHLPRKSVMYRVSRTIVRLHDDFDFRFSDDVENFTAFMHGEVFGHDGDKPLMAKNEGEAIVFPNRKVAIGQRAALMVCKVNTRYEDDQLVYD 342
               SCOP domains d2g9da1 A:3-342 Succinylglutamate desuccinylase AstE                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................eeee.....eeeeee..eeee..........eeeeee......hhhhhhhhhhhhhhhh.......eeeee..hhhhhhh....................hhhhhhhhhhhhhhhhhh...hhh.eeeeeeeee........eeee........hhhhhhhhhhh...eeee......hhhhhhhhhhh.eeeeeeeee...........hhhhhhhhhhhhhh..........eeeeeeeeee.........................................eee..........eeeeeeee..eee....eee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2g9d A   3 KSLFRQSFLFDSLDLDHPmVAQTVRTEQGVTLKLHQRGVLEVIPAQTDAATKNmVISCGIHGDETAPmELLDKWIDDIVSGFQPVAERCLFImAHPQATVRHVRFIEQNLNRLFDDKPHTPSTELAIADNLKVLLRQFFANTDEHSRWHLDLHCAIRGSKHYSFAVSPKARHPVRSRSLmQFIEQAHIEAVmLSNAPSSTFSWYSAEHYAAQALTLELGQVARLGENLLDRLLAFDLAmRDLISRHKPEHLPRKSVmYRVSRTIVRLHDDFDFRFSDDVENFTAFmHGEVFGHDGDKPLmAKNEGEAIVFPNRKVAIGQRAALmVCKVNTRYEDDQLVYD 342
                                    12        22        32        42        52   |    62       |72        82        92  |    102       112       122       132       142       152       162       172       182       192 |     202       212       222       232       242       252      |262       272       282     | 292       302       312       322   |   332       342
                                             21-MSE                             56-MSE        70-MSE                   95-MSE                                                                                182-MSE     194-MSE                                        241-MSE           259-MSE                      288-MSE       302-MSE                 326-MSE
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2G9D)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2G9D)

(-) Gene Ontology  (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (ASTE_VIBCH | Q9KSL4)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0016788    hydrolase activity, acting on ester bonds    Catalysis of the hydrolysis of any ester bond.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0009017    succinylglutamate desuccinylase activity    Catalysis of the reaction: N-succinyl-L-glutamate + H(2)O = L-glutamate + succinate.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0006527    arginine catabolic process    The chemical reactions and pathways resulting in the breakdown of arginine, 2-amino-5-(carbamimidamido)pentanoic acid.
    GO:0019544    arginine catabolic process to glutamate    The chemical reactions and pathways resulting in the breakdown of arginine into other compounds, including glutamate.
    GO:0019545    arginine catabolic process to succinate    The chemical reactions and pathways resulting in the breakdown of arginine into other compounds, including succinate.
    GO:0006525    arginine metabolic process    The chemical reactions and pathways involving arginine, 2-amino-5-(carbamimidamido)pentanoic acid.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

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