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(-) Description

Title :  2.3 A STRUCTURE OF PUTATIVE CATECHOL DEGRADATIVE OPERON REGULATOR FROM RHODOCOCCUS SP. RHA1
 
Authors :  H. Zheng, T. Skarina, M. Chruszcz, M. Cymborowski, M. Grabowski, O. Ono A. Savchenko, A. Edwards, A. Joachimiak, W. Minor, Midwest Center F Structural Genomics (Mcsg)
Date :  01 Mar 06  (Deposition) - 04 Apr 06  (Release) - 05 Oct 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  A,B,C,D  (2x)
Biol. Unit 4:  A,B,C,D  (1x)
Keywords :  Transcriptional Regulator, Iclr Family, Structural Genomics, Mcsg, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Zheng, T. Skarina, M. Chruszcz, M. Cymborowski, M. Grabowski, O. Onopriyenko, A. Savchenko, A. Edwards, W. Minor
2. 3 A Structure Of Putative Catechol Degradative Operon Regulator From Rhodococcus Sp. Rha1
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - TRANSCRIPTIONAL REGULATOR
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: P15TV LIC
    Expression System Strain: BL21-CODONPLUS(DE3)-RP
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: RHA05304
    Organism Scientific: RHODOCOCCUS SP.
    Organism Taxid: 101510
    Strain: RHA1

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD
Biological Unit 3 (2x): ABCD
Biological Unit 4 (1x): ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 16)

Asymmetric Unit (1, 16)
No.NameCountTypeFull Name
1MSE16Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 8)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 8)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 32)
No.NameCountTypeFull Name
1MSE32Mod. Amino AcidSELENOMETHIONINE
Biological Unit 4 (1, 16)
No.NameCountTypeFull Name
1MSE16Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 2G7U)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2G7U)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2G7U)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2G7U)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2G7U)

(-) Exons   (0, 0)

(no "Exon" information available for 2G7U)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:251
 aligned with O33539_RHOOP | O33539 from UniProtKB/TrEMBL  Length:256

    Alignment length:251
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254 
         O33539_RHOOP     5 DRDYIQSIERGFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQKLGYVAGSGGRWSLTPRVLSIGQHYSESHALIEAAMPRLLEVAEKTQESASLGVLDGADVVYAARVPVRRIMSINVSVGTRVPAYATSMGRALLAWAPADVVEQVVAESTFEKLGPETISTAAELDKELAKVREQGFALTSEELEKGLISLPAPVRDAGGTVVGVVACSTSSARNTPAQFREQAVPCVLAAAAALSTDMGFA 255
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2g7uA01 A:5-78 'winged helix' repressor DNA binding domain                2g7uA02 A:79-255  [code=3.30.450.40, no name defined]                                                                                                                             CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhh........hhhhhhhhhh.hhhhhhhhhhhhhhh..eeee..eeee...hhhhhh..hhhhhhhhhhhhhhhhhhhhhh..eeeeeee..eeeeeeee.....eee......eee...hhhhhhhhh..hhhhhhhhhhhh...........hhhhhhhhhhhhhhhh.eeee......eeeeeeeee.....eeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2g7u A   5 DRDYIQSIERGFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQKLGYVAGSGGRWSLTPRVLSIGQHYSESHALIEAAmPRLLEVAEKTQESASLGVLDGADVVYAARVPVRRImSINVSVGTRVPAYATSmGRALLAWAPADVVERVVAESTFQKLGPETIGTAAELERELAKVREQGFALTSEELEKGLISLAAPVHDAGGTVVGVVACSTSSARNTPAQFREQAVPCVLAAAAALSADmGFA 255
                                    14        24        34        44        54        64        74        84    |   94       104       114       124|      134       144       154       164       174       184       194       204       214       224       234       244       254 
                                                                                                               89-MSE                             125-MSE          142-MSE                                                                                                       252-MSE


Chain A from PDB  Type:PROTEIN  Length:251
 aligned with Q0SE57_RHOJR | Q0SE57 from UniProtKB/TrEMBL  Length:256

    Alignment length:251
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254 
         Q0SE57_RHOJR     5 DRDYIQSIERGFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQKLGYVAGSGGRWSLTPRVLSIGQHYSESHALIEAAMPRLLEVAEKTQESASLGVLDGADVVYAARVPVRRIMSINVSVGTRVPAYATSMGRALLAWAPADVVERVVAESTFQKLGPETIGTAAELERELAKVREQGFALTSEELEKGLISLAAPVHDAGGTVVGVVACSTSSARNTPAQFREQAVPCVLAAAAALSADMGFA 255
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2g7uA01 A:5-78 'winged helix' repressor DNA binding domain                2g7uA02 A:79-255  [code=3.30.450.40, no name defined]                                                                                                                             CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhh........hhhhhhhhhh.hhhhhhhhhhhhhhh..eeee..eeee...hhhhhh..hhhhhhhhhhhhhhhhhhhhhh..eeeeeee..eeeeeeee.....eee......eee...hhhhhhhhh..hhhhhhhhhhhh...........hhhhhhhhhhhhhhhh.eeee......eeeeeeeee.....eeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2g7u A   5 DRDYIQSIERGFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQKLGYVAGSGGRWSLTPRVLSIGQHYSESHALIEAAmPRLLEVAEKTQESASLGVLDGADVVYAARVPVRRImSINVSVGTRVPAYATSmGRALLAWAPADVVERVVAESTFQKLGPETIGTAAELERELAKVREQGFALTSEELEKGLISLAAPVHDAGGTVVGVVACSTSSARNTPAQFREQAVPCVLAAAAALSADmGFA 255
                                    14        24        34        44        54        64        74        84    |   94       104       114       124|      134       144       154       164       174       184       194       204       214       224       234       244       254 
                                                                                                               89-MSE                             125-MSE          142-MSE                                                                                                       252-MSE


Chain B from PDB  Type:PROTEIN  Length:250
 aligned with O33539_RHOOP | O33539 from UniProtKB/TrEMBL  Length:256

    Alignment length:250
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255
         O33539_RHOOP     6 RDYIQSIERGFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQKLGYVAGSGGRWSLTPRVLSIGQHYSESHALIEAAMPRLLEVAEKTQESASLGVLDGADVVYAARVPVRRIMSINVSVGTRVPAYATSMGRALLAWAPADVVEQVVAESTFEKLGPETISTAAELDKELAKVREQGFALTSEELEKGLISLPAPVRDAGGTVVGVVACSTSSARNTPAQFREQAVPCVLAAAAALSTDMGFA 255
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2g7uB01 B:6-68 'winged helix' repressor DNA binding domain     2g7uB02 B:69-255  [code=3.30.450.40, no name defined]                                                                                                                                       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhh........hhhhhhhhhh.hhhhhhhhhhhhhhh..eeee..eeee.hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh..eeeeeee..eeeeeeee..............eee...hhhhhhhhh..hhhhhhhhhhhh...........hhhhhhhhhhhhhhhh.eeee......eeeeeeeee.....eeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2g7u B   6 RDYIQSIERGFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQKLGYVAGSGGRWSLTPRVLSIGQHYSESHALIEAAmPRLLEVAEKTQESASLGVLDGADVVYAARVPVRRImSINVSVGTRVPAYATSmGRALLAWAPADVVERVVAESTFQKLGPETIGTAAELERELAKVREQGFALTSEELEKGLISLAAPVHDAGGTVVGVVACSTSSARNTPAQFREQAVPCVLAAAAALSADmGFA 255
                                    15        25        35        45        55        65        75        85   |    95       105       115       125       135      |145       155       165       175       185       195       205       215       225       235       245      |255
                                                                                                              89-MSE                             125-MSE          142-MSE                                                                                                       252-MSE


Chain B from PDB  Type:PROTEIN  Length:250
 aligned with Q0SE57_RHOJR | Q0SE57 from UniProtKB/TrEMBL  Length:256

    Alignment length:250
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255
         Q0SE57_RHOJR     6 RDYIQSIERGFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQKLGYVAGSGGRWSLTPRVLSIGQHYSESHALIEAAMPRLLEVAEKTQESASLGVLDGADVVYAARVPVRRIMSINVSVGTRVPAYATSMGRALLAWAPADVVERVVAESTFQKLGPETIGTAAELERELAKVREQGFALTSEELEKGLISLAAPVHDAGGTVVGVVACSTSSARNTPAQFREQAVPCVLAAAAALSADMGFA 255
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2g7uB01 B:6-68 'winged helix' repressor DNA binding domain     2g7uB02 B:69-255  [code=3.30.450.40, no name defined]                                                                                                                                       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhh........hhhhhhhhhh.hhhhhhhhhhhhhhh..eeee..eeee.hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh..eeeeeee..eeeeeeee..............eee...hhhhhhhhh..hhhhhhhhhhhh...........hhhhhhhhhhhhhhhh.eeee......eeeeeeeee.....eeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2g7u B   6 RDYIQSIERGFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQKLGYVAGSGGRWSLTPRVLSIGQHYSESHALIEAAmPRLLEVAEKTQESASLGVLDGADVVYAARVPVRRImSINVSVGTRVPAYATSmGRALLAWAPADVVERVVAESTFQKLGPETIGTAAELERELAKVREQGFALTSEELEKGLISLAAPVHDAGGTVVGVVACSTSSARNTPAQFREQAVPCVLAAAAALSADmGFA 255
                                    15        25        35        45        55        65        75        85   |    95       105       115       125       135      |145       155       165       175       185       195       205       215       225       235       245      |255
                                                                                                              89-MSE                             125-MSE          142-MSE                                                                                                       252-MSE


Chain C from PDB  Type:PROTEIN  Length:248
 aligned with O33539_RHOOP | O33539 from UniProtKB/TrEMBL  Length:256

    Alignment length:248
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248        
         O33539_RHOOP     9 IQSIERGFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQKLGYVAGSGGRWSLTPRVLSIGQHYSESHALIEAAMPRLLEVAEKTQESASLGVLDGADVVYAARVPVRRIMSINVSVGTRVPAYATSMGRALLAWAPADVVEQVVAESTFEKLGPETISTAAELDKELAKVREQGFALTSEELEKGLISLPAPVRDAGGTVVGVVACSTSSARNTPAQFREQAVPCVLAAAAALSTDMGFAG 256
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2g7uC01 C:9-78 'winged helix' repressor DNA binding domain            2g7uC02 C:79-256  [code=3.30.450.40, no name defined]                                                                                                                              CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhh.........hhhhhhhhhh.hhhhhhhhhhhhhhhh.eeee..eeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeee..eeeeeeee..............eee...hhhhhhhhh..hhhhhhhhhhhh...........hhhhhhhhhhhhhhhh.eeee......eeeeeeeee.....eeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2g7u C   9 IQSIERGFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQKLGYVAGSGGRWSLTPRVLSIGQHYSESHALIEAAmPRLLEVAEKTQESASLGVLDGADVVYAARVPVRRImSINVSVGTRVPAYATSmGRALLAWAPADVVERVVAESTFQKLGPETIGTAAELERELAKVREQGFALTSEELEKGLISLAAPVHDAGGTVVGVVACSTSSARNTPAQFREQAVPCVLAAAAALSADmGFAG 256
                                    18        28        38        48        58        68        78        88|       98       108       118      |128       138   |   148       158       168       178       188       198       208       218       228       238       248   |    
                                                                                                           89-MSE                             125-MSE          142-MSE                                                                                                       252-MSE


Chain C from PDB  Type:PROTEIN  Length:248
 aligned with Q0SE57_RHOJR | Q0SE57 from UniProtKB/TrEMBL  Length:256

    Alignment length:248
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248        
         Q0SE57_RHOJR     9 IQSIERGFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQKLGYVAGSGGRWSLTPRVLSIGQHYSESHALIEAAMPRLLEVAEKTQESASLGVLDGADVVYAARVPVRRIMSINVSVGTRVPAYATSMGRALLAWAPADVVERVVAESTFQKLGPETIGTAAELERELAKVREQGFALTSEELEKGLISLAAPVHDAGGTVVGVVACSTSSARNTPAQFREQAVPCVLAAAAALSADMGFAG 256
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2g7uC01 C:9-78 'winged helix' repressor DNA binding domain            2g7uC02 C:79-256  [code=3.30.450.40, no name defined]                                                                                                                              CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhh.........hhhhhhhhhh.hhhhhhhhhhhhhhhh.eeee..eeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeee..eeeeeeee..............eee...hhhhhhhhh..hhhhhhhhhhhh...........hhhhhhhhhhhhhhhh.eeee......eeeeeeeee.....eeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2g7u C   9 IQSIERGFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQKLGYVAGSGGRWSLTPRVLSIGQHYSESHALIEAAmPRLLEVAEKTQESASLGVLDGADVVYAARVPVRRImSINVSVGTRVPAYATSmGRALLAWAPADVVERVVAESTFQKLGPETIGTAAELERELAKVREQGFALTSEELEKGLISLAAPVHDAGGTVVGVVACSTSSARNTPAQFREQAVPCVLAAAAALSADmGFAG 256
                                    18        28        38        48        58        68        78        88|       98       108       118      |128       138   |   148       158       168       178       188       198       208       218       228       238       248   |    
                                                                                                           89-MSE                             125-MSE          142-MSE                                                                                                       252-MSE


Chain D from PDB  Type:PROTEIN  Length:248
 aligned with O33539_RHOOP | O33539 from UniProtKB/TrEMBL  Length:256

    Alignment length:248
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248        
         O33539_RHOOP     9 IQSIERGFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQKLGYVAGSGGRWSLTPRVLSIGQHYSESHALIEAAMPRLLEVAEKTQESASLGVLDGADVVYAARVPVRRIMSINVSVGTRVPAYATSMGRALLAWAPADVVEQVVAESTFEKLGPETISTAAELDKELAKVREQGFALTSEELEKGLISLPAPVRDAGGTVVGVVACSTSSARNTPAQFREQAVPCVLAAAAALSTDMGFAG 256
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2g7uD01 D:9-68 'winged helix' repressor DNA binding domain  2g7uD02 D:69-256  [code=3.30.450.40, no name defined]                                                                                                                                        CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhh.........hhhhhhhhhh.hhhhhhhhhhhhhhh..eeee..eeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeee..eeeeeeee.....eee......eee...hhhhhhhhh..hhhhhhhhhhhh...........hhhhhhhhhhhhhhhh.eeee......eeeeeeeee.....eeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2g7u D   9 IQSIERGFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQKLGYVAGSGGRWSLTPRVLSIGQHYSESHALIEAAmPRLLEVAEKTQESASLGVLDGADVVYAARVPVRRImSINVSVGTRVPAYATSmGRALLAWAPADVVERVVAESTFQKLGPETIGTAAELERELAKVREQGFALTSEELEKGLISLAAPVHDAGGTVVGVVACSTSSARNTPAQFREQAVPCVLAAAAALSADmGFAG 256
                                    18        28        38        48        58        68        78        88|       98       108       118      |128       138   |   148       158       168       178       188       198       208       218       228       238       248   |    
                                                                                                           89-MSE                             125-MSE          142-MSE                                                                                                       252-MSE


Chain D from PDB  Type:PROTEIN  Length:248
 aligned with Q0SE57_RHOJR | Q0SE57 from UniProtKB/TrEMBL  Length:256

    Alignment length:248
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248        
         Q0SE57_RHOJR     9 IQSIERGFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQKLGYVAGSGGRWSLTPRVLSIGQHYSESHALIEAAMPRLLEVAEKTQESASLGVLDGADVVYAARVPVRRIMSINVSVGTRVPAYATSMGRALLAWAPADVVERVVAESTFQKLGPETIGTAAELERELAKVREQGFALTSEELEKGLISLAAPVHDAGGTVVGVVACSTSSARNTPAQFREQAVPCVLAAAAALSADMGFAG 256
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2g7uD01 D:9-68 'winged helix' repressor DNA binding domain  2g7uD02 D:69-256  [code=3.30.450.40, no name defined]                                                                                                                                        CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhh.........hhhhhhhhhh.hhhhhhhhhhhhhhh..eeee..eeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeee..eeeeeeee.....eee......eee...hhhhhhhhh..hhhhhhhhhhhh...........hhhhhhhhhhhhhhhh.eeee......eeeeeeeee.....eeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2g7u D   9 IQSIERGFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQKLGYVAGSGGRWSLTPRVLSIGQHYSESHALIEAAmPRLLEVAEKTQESASLGVLDGADVVYAARVPVRRImSINVSVGTRVPAYATSmGRALLAWAPADVVERVVAESTFQKLGPETIGTAAELERELAKVREQGFALTSEELEKGLISLAAPVHDAGGTVVGVVACSTSSARNTPAQFREQAVPCVLAAAAALSADmGFAG 256
                                    18        28        38        48        58        68        78        88|       98       108       118      |128       138   |   148       158       168       178       188       198       208       218       228       238       248   |    
                                                                                                           89-MSE                             125-MSE          142-MSE                                                                                                       252-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2G7U)

(-) CATH Domains  (2, 8)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2G7U)

(-) Gene Ontology  (5, 10)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (O33539_RHOOP | O33539)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
biological process
    GO:0046278    3,4-dihydroxybenzoate metabolic process    The chemical reactions and pathways involving protocatechuate, the anion of protocatechuic acid (3,4-dihydroxybenzoic acid).
    GO:0045893    positive regulation of transcription, DNA-templated    Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.

Chain A,B,C,D   (Q0SE57_RHOJR | Q0SE57)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
biological process
    GO:0046278    3,4-dihydroxybenzoate metabolic process    The chemical reactions and pathways involving protocatechuate, the anion of protocatechuic acid (3,4-dihydroxybenzoic acid).
    GO:0045893    positive regulation of transcription, DNA-templated    Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.

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