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(-) Description

Title :  SOLUTION STRUCTURE OF THE 2'-5' RNA LIGASE-LIKE PROTEIN FROM PYROCOCCUS FURIOSUS
 
Authors :  K. Okada, T. Matsuda, T. Sakamoto, Y. Muto, S. Yokoyama, A. Kanai, G. Kaw Structural Genomics/Proteomics Initiative (Rsgi)
Date :  08 Feb 06  (Deposition) - 20 Feb 07  (Release) - 24 Nov 10  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  2'-5' Rna Ligase-Like Protein, Hxtx Motif, Pyrococcus Furiosus, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Ligase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Kanai, A. Sato, Y. Fukuda, K. Okada, T. Matsuda, T. Sakamoto, Y. Muto S. Yokoyama, G. Kawai, M. Tomita
Characterization Of A Heat-Stable Enzyme Possessing Gtp-Dependent Rna Ligase Activity From A Hyperthermophilic Archaeon, Pyrococcus Furiosus
Rna V. 15 420 2009
PubMed-ID: 19155324  |  Reference-DOI: 10.1261/RNA.1122109

(-) Compounds

Molecule 1 - PUTATIVE INTEGRAL MEMBRANE TRANSPORT PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET23B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: PF0027
    Organism Scientific: PYROCOCCUS FURIOSUS
    Organism Taxid: 186497
    Strain: DSM3638
    Synonym: 2'-5' RNA LIGASE-LIKE PROTEIN

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2FYH)

(-) Sites  (0, 0)

(no "Site" information available for 2FYH)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2FYH)

(-) Cis Peptide Bonds  (1, 20)

NMR Structure
No.ModelResidues
11, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20Phe A:81 -Pro A:82

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2FYH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2FYH)

(-) Exons   (0, 0)

(no "Exon" information available for 2FYH)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:190
 aligned with THPR_PYRFU | Q8U4Q3 from UniProtKB/Swiss-Prot  Length:184

    Alignment length:190
                                                                                                                                                                                                                 184      
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180   |     -
           THPR_PYRFU     1 MRAFIAIDVSESVRDALVRAQDYIGSKEAKIKFVERENFHITLKFLGEITEEQAEEIKKILEKIAKKYKKHEVNVRGIGVFPNPNYVRVIWAGVENDEIIKKIAKEIDDELAKLGFKKEGNFVAHITLGRVKFVKDKLGLAMKLKELANEDFGSFIVEAIELKKSTLTPKGPIYETLARFELSE------   -
               SCOP domains d2fyha_ A: automated matches                                                                                                                                                                   SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..hhhhhhhhhhhhhhhh.....eee.hhhhh.eeeeeee....hhhhhhhhhhhhhhhhh...eeeeeeeeeeee..eeeeeeeee..hhhhhhhhhhhhhhhhhhh.........eeeeeee....hhhhhhhhhhhh...eeeeee...eeeeeeeee..eeeeeeeeee.......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2fyh A   1 MRAFIAIDVSESVRDALVRAQDYIGSKEAKIKFVERENFHITLKFLGEITEEQAEEIKKILEKIAKKYKKHEVNVRGIGVFPNPNYVRVIWAGVENDEIIKKIAKEIDDELAKLGFKKEGNFVAHITLGRVKFVKDKLGLAMKLKELANEDFGSFIVEAIELKKSTLTPKGPIYETLARFELSEHHHHHH 190
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2FYH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2FYH)

(-) Gene Ontology  (4, 4)

NMR Structure(hide GO term definitions)
Chain A   (THPR_PYRFU | Q8U4Q3)
molecular function
    GO:0004113    2',3'-cyclic-nucleotide 3'-phosphodiesterase activity    Catalysis of the reaction: nucleoside 2',3'-cyclic phosphate + H2O = nucleoside 2'-phosphate.
    GO:0008664    2'-5'-RNA ligase activity    Catalysis of the formation of a phosphodiester bond between the 2'-hydroxyl group at the end of one DNA chain and the 5'-phosphate group at the end of another.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0008081    phosphoric diester hydrolase activity    Catalysis of the hydrolysis of a phosphodiester to give a phosphomonoester and a free hydroxyl group.

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  Cis Peptide Bonds
    Phe A:81 - Pro A:82   [ RasMol ]  
 

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