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(-) Description

Title :  PHOSPHOGLUCOMUTASE FROM SALMONELLA TYPHIMURIUM.
 
Authors :  J. Osipiuk, R. Wu, D. Holzle, F. Collart, A. Joachimiak, Midwest Cente Structural Genomics (Mcsg)
Date :  27 Jan 06  (Deposition) - 07 Mar 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Phosphoglucomutase, Structural Genomics, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Osipiuk, R. Wu, D. Holzle, F. Collart, A. Joachimiak
X-Ray Crystal Structure Of Phosphoglucomutase From Salmonella Typhimurium.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PHOSPHOGLUCOMUTASE
    Chains: A, B
    EC Number: 5.4.2.2
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: PGM
    Organism Scientific: SALMONELLA TYPHIMURIUM
    Organism Taxid: 99287
    Strain: LT2

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 23)

Asymmetric/Biological Unit (2, 23)
No.NameCountTypeFull Name
1MG3Ligand/IonMAGNESIUM ION
2MSE20Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:146 , ASP A:304 , ASP A:306 , ASP A:308 , HOH A:1054BINDING SITE FOR RESIDUE MG A 901
2AC2SOFTWARESER B:146 , ASP B:304 , ASP B:306 , ASP B:308 , HOH B:1219BINDING SITE FOR RESIDUE MG B 902
3AC3SOFTWAREHOH B:1025 , HOH B:1062 , HOH B:1191 , HOH B:1313 , HOH B:1314 , HOH B:1348BINDING SITE FOR RESIDUE MG B 903

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2FUV)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2FUV)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2FUV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2FUV)

(-) Exons   (0, 0)

(no "Exon" information available for 2FUV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:545
 aligned with Q8ZQW9_SALTY | Q8ZQW9 from UniProtKB/TrEMBL  Length:546

    Alignment length:545
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541     
         Q8ZQW9_SALTY     2 AIHNRAGQPAQQSDLINVAQLTAQYYVLKPEAGNAEHAVKFGTSGHRGSAGRHSFNEPHILAIAQAIAEERAKNGITGPCYVGKDTHALSEPAFISVLEVLAANGVDVIVQENNGFTPTPAVSNAILVHNKKGGPLADGIVITPSHNPPEDGGIKYNPPNGGPADTNVTKVVEDRANALLAGGLQGVKRISLDAAMASGHVKAVDLVQPFVEGLADIVDMAAIQKAGLTLGVDPLGGSGIEYWKRIAEHYKLNLTLVNDQVDQTFRFMHLDKDGAIRMDCSSECAMAGLLALRDKFDLAFANDPDYDRHGIVTPAGLMNPNHYLAVAINYLFQHRPLWGKDVAVGKTLVSSAMIDRVVNDLGRKLVEVPVGFKWFVDGLFDGSFGFGGEESAGASFLRFDGTPWSTDKDGIIMCLLAAEITAVTGKNPQEHYNELAARFGAPSYNRLQASATSAQKAALSKLSPEMVSASTLAGDPITARLTAAPGNGASIGGLKVMTDNGWFAARPSGTEDAYKIYCESFLGEEHRKQIEKEAVEIVSEVLKNA 546
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------2fuvA01 A:12-218 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3                                                                                                                                         ----2fuvA02 A:223-317 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3                        2fuvA03 A:318-442 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3                                                      2fuvA04 A:443-546 Major birch pollen allergen Bet v 1                                                    CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhh.hhhhhhhhhhhh.....hhhhh.......eeehhhhh..hhhhhhhhhhhhhhhhhhh.....eeeee....hhhhhhhhhhhhhhhh...eeee.hhh..hhhhhhhhhhhhhhh.....eeeee.........eeeeee.......hhhhhhhhhhhhhhhhhh........hhhhhhhh..eeee.hhhhhhhhhhhh.hhhhhhhhh..eeee.....hhhhhhhhhhhh...eee.............................hhhhhhhhhhh.eeee........eeee..ee.hhhhhhhhhhhhhhhh........eeeee....hhhhhhhhhhh..eeee..hhhhhhhhhhh..eeeeee...eeee............hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh..eeeeeeee.hhhhhhhhhhhhhhhh...ee..ee..eeeee......eeeeeeee...eeeeeee.....eeeeeeee..hhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2fuv A   2 AIHNRAGQPAQQSDLINVAQLTAQYYVLKPEAGNAEHAVKFGTSGHRGSAGRHSFNEPHILAIAQAIAEERAKNGITGPCYVGKDTHALSEPAFISVLEVLAANGVDVIVQENNGFTPTPAVSNAILVHNKKGGPLADGIVITPSHNPPEDGGIKYNPPNGGPADTNVTKVVEDRANALLAGGLQGVKRISLDAAmASGHVKAVDLVQPFVEGLADIVDmAAIQKAGLTLGVDPLGGSGIEYWKRIAEHYKLNLTLVNDQVDQTFRFmHLDKDGAIRmDCSSECAmAGLLALRDKFDLAFANDPDYDRHGIVTPAGLmNPNHYLAVAINYLFQHRPLWGKDVAVGKTLVSSAmIDRVVNDLGRKLVEVPVGFKWFVDGLFDGSFGFGGEESAGASFLRFDGTPWSTDKDGIImCLLAAEITAVTGKNPQEHYNELAARFGAPSYNRLQASATSAQKAALSKLSPEmVSASTLAGDPITARLTAAPGNGASIGGLKVmTDNGWFAARPSGTEDAYKIYCESFLGEEHRKQIEKEAVEIVSEVLKNA 546
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191     | 201       211       221       231       241       251       261       271       281     | 291       301       311       321       331       341       351  |    361       371       381       391       401       411  |    421       431       441       451       461     | 471       481       491      |501       511       521       531       541     
                                                                                                                                                                                                                             197-MSE                 221-MSE                                         269-MSE   279-MSE 287-MSE                         319-MSE                            354-MSE                                                     414-MSE                                              467-MSE                        498-MSE                                            


Chain B from PDB  Type:PROTEIN  Length:545
 aligned with Q8ZQW9_SALTY | Q8ZQW9 from UniProtKB/TrEMBL  Length:546

    Alignment length:545
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541     
         Q8ZQW9_SALTY     2 AIHNRAGQPAQQSDLINVAQLTAQYYVLKPEAGNAEHAVKFGTSGHRGSAGRHSFNEPHILAIAQAIAEERAKNGITGPCYVGKDTHALSEPAFISVLEVLAANGVDVIVQENNGFTPTPAVSNAILVHNKKGGPLADGIVITPSHNPPEDGGIKYNPPNGGPADTNVTKVVEDRANALLAGGLQGVKRISLDAAMASGHVKAVDLVQPFVEGLADIVDMAAIQKAGLTLGVDPLGGSGIEYWKRIAEHYKLNLTLVNDQVDQTFRFMHLDKDGAIRMDCSSECAMAGLLALRDKFDLAFANDPDYDRHGIVTPAGLMNPNHYLAVAINYLFQHRPLWGKDVAVGKTLVSSAMIDRVVNDLGRKLVEVPVGFKWFVDGLFDGSFGFGGEESAGASFLRFDGTPWSTDKDGIIMCLLAAEITAVTGKNPQEHYNELAARFGAPSYNRLQASATSAQKAALSKLSPEMVSASTLAGDPITARLTAAPGNGASIGGLKVMTDNGWFAARPSGTEDAYKIYCESFLGEEHRKQIEKEAVEIVSEVLKNA 546
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------2fuvB01 B:12-218 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3                                                                                                                                         ----2fuvB02 B:223-317 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3                        2fuvB03 B:318-442 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3                                                      2fuvB04 B:443-546 Major birch pollen allergen Bet v 1                                                    CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhh.hhhhhhhhhhhh.....hhhhh.......eeehhhhh..hhhhhhhhhhhhhhhhhhh.....eeeee....hhhhhhhhhhhhhhhh...eeee.hhh..hhhhhhhhhhhhhhh.....eeeee.........eeeeee.......hhhhhhhhhhhhhhhhhh........hhhhhhhh..eeee.hhhhhhhhhhhh.hhhhhhhhh..eeee.....hhhhhhhhhhhh...eee.............................hhhhhhhhhhh.eeeee......eeeee..ee.hhhhhhhhhhhhhh..........eeeee....hhhhhhhhhhh..eeee..hhhhhhhhhhh..eeeeee...eeee............hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh..eeeeeeee.hhhhhhhhhhhhhhhh...ee..ee..eeeee......eeeeeeee...eeeeeee.....eeeeeeee..hhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2fuv B   2 AIHNRAGQPAQQSDLINVAQLTAQYYVLKPEAGNAEHAVKFGTSGHRGSAGRHSFNEPHILAIAQAIAEERAKNGITGPCYVGKDTHALSEPAFISVLEVLAANGVDVIVQENNGFTPTPAVSNAILVHNKKGGPLADGIVITPSHNPPEDGGIKYNPPNGGPADTNVTKVVEDRANALLAGGLQGVKRISLDAAmASGHVKAVDLVQPFVEGLADIVDmAAIQKAGLTLGVDPLGGSGIEYWKRIAEHYKLNLTLVNDQVDQTFRFmHLDKDGAIRmDCSSECAmAGLLALRDKFDLAFANDPDYDRHGIVTPAGLmNPNHYLAVAINYLFQHRPLWGKDVAVGKTLVSSAmIDRVVNDLGRKLVEVPVGFKWFVDGLFDGSFGFGGEESAGASFLRFDGTPWSTDKDGIImCLLAAEITAVTGKNPQEHYNELAARFGAPSYNRLQASATSAQKAALSKLSPEmVSASTLAGDPITARLTAAPGNGASIGGLKVmTDNGWFAARPSGTEDAYKIYCESFLGEEHRKQIEKEAVEIVSEVLKNA 546
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191     | 201       211       221       231       241       251       261       271       281     | 291       301       311       321       331       341       351  |    361       371       381       391       401       411  |    421       431       441       451       461     | 471       481       491      |501       511       521       531       541     
                                                                                                                                                                                                                             197-MSE                 221-MSE                                         269-MSE   279-MSE 287-MSE                         319-MSE                            354-MSE                                                     414-MSE                                              467-MSE                        498-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2FUV)

(-) CATH Domains  (2, 8)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2FUV)

(-) Gene Ontology  (11, 11)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (Q8ZQW9_SALTY | Q8ZQW9)
molecular function
    GO:0016868    intramolecular transferase activity, phosphotransferases    Catalysis of the transfer of a phosphate group from one position to another within a single molecule.
    GO:0016853    isomerase activity    Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
    GO:0000287    magnesium ion binding    Interacting selectively and non-covalently with magnesium (Mg) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0004614    phosphoglucomutase activity    Catalysis of the reaction: alpha-D-glucose 1-phosphate = alpha-D-glucose 6-phosphate.
biological process
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
    GO:0019388    galactose catabolic process    The chemical reactions and pathways resulting in the breakdown of galactose, the aldohexose galacto-hexose.
    GO:0006006    glucose metabolic process    The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides.
    GO:0005978    glycogen biosynthetic process    The chemical reactions and pathways resulting in the formation of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues.
    GO:0071704    organic substance metabolic process    The chemical reactions and pathways involving an organic substance, any molecular entity containing carbon.
cellular component
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

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  2fuv
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  5.4.2.2
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q8ZQW9_SALTY | Q8ZQW9: 3na5 3olp

(-) Related Entries Specified in the PDB File

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