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(-)Theoretical Model
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Theoretical Model  (Jmol Viewer)

(-) Description

Title :  THE CUB DOMAIN OF ST14
 
Authors :  W. -T. Ge, H. -G. Hu, K. -F. Ding, L. -F. Sun, S. Zheng
Date :  10 Jan 06  (Deposition) - 14 Mar 06  (Release) - 14 Mar 06  (Revision)
Method :  THEORETICAL MODEL
Resolution :  NOT APPLICABLE
Chains :  Theor. Model :  A,_#
#:   chains that contain no standard or modified protein/DNA/RNA residue)
 
Keywords :  Cub Domain, Interaction (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  W. -T. Ge, H. -G. Hu, K. -F. Ding, L. -F. Sun, S. Zheng
Protein Interaction Analysis Of St14 Domains And Their Point And Deletion Mutants
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - SUPPRESSOR OF TUMORIGENICITY 14
    ChainsA
    EC Number3.4.21.-
    FragmentCUB DOMAIN
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    SynonymMATRIPTASE, MEMBRANE- TYPE SERINE PROTEASE 1, MT- SP1, PROSTAMIN, SERINE PROTEASE TADG-15, TUMOR ASSOCIATED DIFFERENTIALLY-EXPRESSED GENE 15 PROTEIN

 Structural Features

(-) Chains, Units

  
Theoretical Model 
#:   chains that contain no standard or modified protein/DNA/RNA residue)
 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Theoretical Model (2, 2)
No.NameCountTypeFull Name
1AHB1Ligand/IonBETA-HYDROXYASPARAGINE
2NAG1Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (0, 0)

(no "Site" information available for 2FMV)

(-) SS Bonds  (1, 1)

Theoretical Model
No.Residues
1A:185 -A:198

(-) Cis Peptide Bonds  (3, 3)

Theoretical Model
No.Residues
1Phe A:21 -Pro A:22
2Tyr A:144 -Pro A:145
3Glu A:195 -Lys A:196

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2FMV)

(-) PROSITE Motifs  (1, 1)

Theoretical Model (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CUBPS01180 CUB domain profile.ST14_HUMAN340-447
214-334
  1A:128-234
-

(-) Exons   (5, 5)

Theoretical Model (5, 5)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1aENST000002787421aENSE00001334626chr11:130029457-130029955499ST14_HUMAN1-27270--
1.2ENST000002787422ENSE00000990418chr11:130058009-130058168160ST14_HUMAN28-81540--
1.3ENST000002787423ENSE00000990419chr11:130058425-130058552128ST14_HUMAN81-123430--
1.4ENST000002787424ENSE00000990421chr11:130058764-13005883471ST14_HUMAN124-147240--
1.5cENST000002787425cENSE00000990422chr11:130059634-130059791158ST14_HUMAN147-200540--
1.6bENST000002787426bENSE00000990423chr11:130060008-13006004336ST14_HUMAN200-212130--
1.7bENST000002787427bENSE00001278516chr11:130060349-130060589241ST14_HUMAN212-292811A:10-80 (gaps)71
1.8ENST000002787428ENSE00000990429chr11:130064044-130064183140ST14_HUMAN292-339481A:80-127 (gaps)48
1.9ENST000002787429ENSE00000990430chr11:130064535-13006463298ST14_HUMAN339-371331A:127-15933
1.10bENST0000027874210bENSE00000990431chr11:130066234-130066343110ST14_HUMAN372-408371A:160-196 (gaps)37
1.11bENST0000027874211bENSE00000990432chr11:130066465-130066595131ST14_HUMAN408-452451A:196-23439
1.12ENST0000027874212ENSE00000990433chr11:130067736-130067840105ST14_HUMAN452-487360--
1.13ENST0000027874213ENSE00000990434chr11:130068203-130068313111ST14_HUMAN487-524380--
1.14ENST0000027874214ENSE00000990435chr11:130068403-130068516114ST14_HUMAN524-562390--
1.15ENST0000027874215ENSE00000990436chr11:130068842-130068964123ST14_HUMAN562-603420--
1.16ENST0000027874216ENSE00000990437chr11:130069846-130070032187ST14_HUMAN603-665630--
1.17ENST0000027874217ENSE00000990438chr11:130078305-130078579275ST14_HUMAN665-757930--
1.18ENST0000027874218ENSE00000990439chr11:130079337-130079473137ST14_HUMAN757-802460--
1.19bENST0000027874219bENSE00000990440chr11:130079557-130080271715ST14_HUMAN803-855530--

(-) Sequences/Alignments

Theoretical Model
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:209
 aligned with ST14_HUMAN | Q9Y5Y6 from UniProtKB/Swiss-Prot  Length:855

    Alignment length:225
                                   231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441     
           ST14_HUMAN   222 GVELMRFTTPGFPDSPYPAHARCQWALRGDADSVLSLTFRSFDLASCDERGSDLVTVYNTLSPMEPHALVQLCGTYPPSYNLTFHSSQNVLLITLITNTERRHPGFEATFFQLPRMSSCGGRLRKAQGTFNSPYYPGHYPPNIDCTWNIEVPNNQHVKVRFKFFYLLEPGVPAGTCPKDYVEINGEKYCGERSQFVVTSNSNKITVRFHSDQSYTDTGFLAEYLS 446
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee.......-......eeeeee.......eeeeeeee...hhhhh..eeeeee.-----.eeeeee..........eee....eeeeeee...--...eeeeeee.......eeeee....eeee............eeeeeee.......ee---ee--..........--.eee..-...........ee....eeeeeee..........eeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE CUB  PDB: - UniProt: 214-334                                                                                     -----CUB  PDB: A:128-234 UniProt: 340-447                                                                        PROSITE
           Transcript 1 (1) Exon 1.7b  PDB: A:10-80 (gaps) UniProt: 212-292 [INCOMPLETE]           ----------------------------------------------Exon 1.9  PDB: A:127-159         Exon 1.10b  PDB: A:160-196 (gaps)    -------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------------------------------Exon 1.8  PDB: A:80-127 (gaps) UniProt: 292-339 --------------------------------------------------------------------Exon 1.11b  PDB: A:196-234 [INCOMPLETE] Transcript 1 (2)
                 2fmv A  10 GVELMRFTTPGFPDS-YPAHARCQWALRGDADSVLSLTFRSFDLASCDERGSDLVTVYNT-----PHALVQLCGTYPPSYNLTFHSSQNVLLITLITNT--RHPGFEATFFQLPRMSSCGGRLRKAQGTFNSPYYPGHYPPNIDCTWNIEVPNNQHVKV---FF--LEPGVPAGTC--DYVEIN-EKYCGERSQFVVTSNSNKITVRFHSDQSYTDTGFLAEYLS 234
                                    19    | | 29        39        49        59        69     |  79        89        99        |- |     119       129       139       149       159        |-  ||  |179     | 189   | | 199       209       219       229     
                                         24 |                                         69    75                              108  |                                                      168 172|  |      185  |  193 |                                       
                                           26                                                                                  111                                                           173  |         188    195                                       
                                                                                                                                                                                                176                                                          

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2FMV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2FMV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2FMV)

(-) Gene Ontology  (17, 17)

Theoretical Model(hide GO term definitions)
Chain A   (ST14_HUMAN | Q9Y5Y6)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0008233    peptidase activity    Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
    GO:0004252    serine-type endopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
    GO:0008236    serine-type peptidase activity    Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
biological process
    GO:0060672    epithelial cell morphogenesis involved in placental branching    The change in form (cell shape and size) that occurs when a trophoblast cell elongates to contribute to the branching of the placenta.
    GO:0030216    keratinocyte differentiation    The process in which a relatively unspecialized cell acquires specialized features of a keratinocyte.
    GO:0001843    neural tube closure    The last step in the formation of the neural tube, where the paired neural folds are brought together and fuse at the dorsal midline.
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
cellular component
    GO:0016323    basolateral plasma membrane    The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
    GO:0019897    extrinsic component of plasma membrane    The component of a plasma membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0005887    integral component of plasma membrane    The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ST14_HUMAN | Q9Y5Y61eaw 1eax 2gv6 2gv7 3bn9 3ncl 3nps 3p8f 3p8g 3so3 4is5 4isl 4isn 4iso 4jyt 4jz1 4jzi 4o97 4o9v 4r0i

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