2FMH - JenaLib

Title :   CRYSTAL STRUCTURE OF MG2+ AND BEF3- BOUND CHEY IN COMPLEX WITH CHEZ 200-214 SOLVED FROM A F432 CRYSTAL GROWN IN TRIS (PH 8.4)

Authors :   J. Guhaniyogi, V. L. Robinson, A. M. Stock

Date :   09 Jan 06 (Deposition) - 23 May 06 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: A,B  (24x)
Biol. Unit 3: A,B  (3x)

Keywords :   Chemotaxis; Bef(3)(-)-Bound Chey; Chey-Chez Peptide Complex, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Guhaniyogi, V. L. Robinson, A. M. Stock
Crystal Structures Of Beryllium Fluoride-Free And Beryllium Fluoride-Bound Chey In Complex With The Conserved C-Termina Peptide Of Chez Reveal Dual Binding Modes Specific To Chey Conformation.
J. Mol. Biol. V. 359 624 2006
PubMed-ID: 16674976 | Reference-DOI: 10.1016/J.JMB.2006.03.050

Compounds

Molecule 1 - CHEMOTAXIS PROTEIN CHEY
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PUC18
	Expression System Strain	:	HB101
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	CHEY
	Organism Scientific	:	SALMONELLA TYPHIMURIUM
	Organism Taxid	:	99287
	Strain	:	LT2

Molecule 2 - C-TERMINAL 15-MER FROM CHEMOTAXIS PROTEIN CHEZ
	Chains	:	B
	Engineered	:	YES
	Fragment	:	RESIDUES 200-214
	Other Details	:	THIS SEQUENCE CORRESPONDS TO THE C-TERMINAL 15 RESIDUES OF THE CHEZ PROTEIN OCCURRING NATURALLY IN SALMONELLA ENTERICA SEROVAR TYPHUMURIUM
	Synthetic	:	YES

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 5)

Asymmetric Unit (5, 5)

No.	Name	Count	Type	Full Name
1	BEF	1	Ligand/Ion	BERYLLIUM TRIFLUORIDE ION
2	GOL	1	Ligand/Ion	GLYCEROL
3	MG	1	Ligand/Ion	MAGNESIUM ION
4	SO4	1	Ligand/Ion	SULFATE ION
5	TRS	1	Ligand/Ion	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

Biological Unit 1 (4, 4)

No.	Name	Count	Type	Full Name
1	BEF	1	Ligand/Ion	BERYLLIUM TRIFLUORIDE ION
2	GOL	1	Ligand/Ion	GLYCEROL
3	MG	-1	Ligand/Ion	MAGNESIUM ION
4	SO4	1	Ligand/Ion	SULFATE ION
5	TRS	1	Ligand/Ion	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

Biological Unit 2 (4, 96)

No.	Name	Count	Type	Full Name
1	BEF	24	Ligand/Ion	BERYLLIUM TRIFLUORIDE ION
2	GOL	24	Ligand/Ion	GLYCEROL
3	MG	-1	Ligand/Ion	MAGNESIUM ION
4	SO4	24	Ligand/Ion	SULFATE ION
5	TRS	24	Ligand/Ion	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

Biological Unit 3 (4, 12)

No.	Name	Count	Type	Full Name
1	BEF	3	Ligand/Ion	BERYLLIUM TRIFLUORIDE ION
2	GOL	3	Ligand/Ion	GLYCEROL
3	MG	-1	Ligand/Ion	MAGNESIUM ION
4	SO4	3	Ligand/Ion	SULFATE ION
5	TRS	3	Ligand/Ion	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

Sites (5, 5)

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 1)

Asymmetric Unit (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	RESPONSE_REGULATORY	PS50110	Response regulatory domain profile.	CHEY_SALTY	7-124	1	A:7-124

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	RESPONSE_REGULATORY	PS50110	Response regulatory domain profile.	CHEY_SALTY	7-124	1	A:7-124

Biological Unit 2 (1, 24)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	RESPONSE_REGULATORY	PS50110	Response regulatory domain profile.	CHEY_SALTY	7-124	24	A:7-124

Biological Unit 3 (1, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	RESPONSE_REGULATORY	PS50110	Response regulatory domain profile.	CHEY_SALTY	7-124	3	A:7-124

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:128
 aligned with CHEY_SALTY | P0A2D5 from UniProtKB/Swiss-Prot  Length:129

    Alignment length:128
                                    11        21        31        41        51        61        71        81        91       101       111       121        
           CHEY_SALTY     2 ADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGFGFIISDWNMPNMDGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEKLGM 129
               SCOP domains d2fmha_ A: CheY protein                                                                                                          SCOP domains
               CATH domains 2fmhA00 A:2-129  [code=3.40.50.2300, no name defined]                                                                            CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee..hhhhhhhhhhhhhhh....eeee.hhhhhhhhhh.....eeeee......hhhhhhhhhhhh.......eeeee...hhhhhhhhhhhh..eeee...hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----RESPONSE_REGULATORY  PDB: A:7-124 UniProt: 7-124                                                                      ----- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2fmh A   2 ADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGFGFIISDWNMPNMDGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEKLGM 129
                                    11        21        31        41        51        61        71        81        91       101       111       121

Chain B from PDB  Type:PROTEIN  Length:11
 aligned with CHEZ_SALTY | P07800 from UniProtKB/Swiss-Prot  Length:214

    Alignment length:11
                                   213 
           CHEZ_SALTY   204 QVDDLLDSLGF 214
               SCOP domains ----------- SCOP domains
               CATH domains ----------- CATH domains
               Pfam domains ----------- Pfam domains
         Sec.struct. author .hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------- SAPs(SNPs)
                    PROSITE ----------- PROSITE
                 Transcript ----------- Transcript
                 2fmh B 204 QVDDLLDSLGF 214
                                   213

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (1, 1)

Pfam Domains (0, 0)

Gene Ontology (11, 14)

Asymmetric Unit(hide GO term definitions)

Chain A (CHEY_SALTY | P0A2D5)

molecular function
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
biological process
	GO:0097588	archaeal or bacterial-type flagellum-dependent cell motility	Cell motility due to movement of bacterial- or archaeal-type flagella.
	GO:0006935	chemotaxis	The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis).
	GO:0000160	phosphorelay signal transduction system	A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Chain B (CHEZ_SALTY | P07800)

molecular function
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0004721	phosphoprotein phosphatase activity	Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity.
biological process
	GO:0097588	archaeal or bacterial-type flagellum-dependent cell motility	Cell motility due to movement of bacterial- or archaeal-type flagella.
	GO:0006935	chemotaxis	The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis).
	GO:0006470	protein dephosphorylation	The process of removing one or more phosphoric residues from a protein.
	GO:0050920	regulation of chemotaxis	Any process that modulates the frequency, rate or extent of the directed movement of a motile cell or organism in response to a specific chemical concentration gradient.
cellular component
	GO:0009288	bacterial-type flagellum	A motor complex composed of an extracellular helical protein filament coupled to a rotary motor embedded in the cell envelope.
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File

2fka	THE MG2+ AND BEF3--BOUND CHEY-CHEZ PEPTIDE COMPLEX IN THE SAME SPACE GROUP BUT SOLVED FROM CRYSTALS GROWN IN CAPS (PH 10.5)
2flk	THE CHEY-CHEZ PEPTIDE COMPLEX IN THE SAME SPACE GROUP AND SOLVED FROM CRYSTALS GROWN UNDER THE SAME CONDITIONS BUT WITHOUT MG2+ AND BEF3- LIGANDS BOUND TO CHEY
2flw	THE MG2+ AND BEF3--BOUND CHEY-CHEZ PEPTIDE COMPLEX IN THE SAME SPACE GROUP BUT SOLVED FROM CRYSTALS GROWN IN HEPES (PH 7.5)
2fmf	THE CHEY-CHEZ PEPTIDE COMPLEX IN THE SAME SPACE GROUP BUT SOLVED FROM CRYSTALS GROWN IN HEPES (PH 7.5) AND WITHOUT MG2+ AND BEF3- LIGANDS BOUND TO CHEY
2fmi	THE CHEY-CHEZ PEPTIDE COMPLEX IN THE SAME SPACE GROUP BUT SOLVED FROM CRYSTALS GROWN IN TRIS (PH 8.4) AND WITHOUT MG2+ AND BEF3- LIGANDS BOUND TO CHEY
2fmk	THE MG2+ AND BEF3--BOUND CHEY-CHEZ PEPTIDE COMPLEX SOLVED FROM P2(1)2(1)2 CRYSTALS GROWN IN MES (PH 6.0)

Description