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(-) Description

Title :  THE CRYSTAL STRUCTURE OF D-RIBULOSE 5-PHOSPHATE 3-EPIMERASE FROM STREPTOCOCUS PYOGENES COMPLEXED WITH D-XYLITOL 5-PHOSPHATE
 
Authors :  A. A. Fedorov, E. V. Fedorov, J. Akana, J. A. Gerlt, S. C. Almo
Date :  06 Jan 06  (Deposition) - 07 Mar 06  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1:  A,B,C,D,E,F  (1x)
Biol. Unit 2:  G,H,I,J,K,L  (1x)
Keywords :  D-Ribulose 5-Phosphate 3-Epimerase, (Beta/Alpha)8-Barrel, D- Xylitol 5-Phosphate, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. Akana, A. A. Fedorov, E. Fedorov, W. R. Novak, P. C. Babbitt, S. C. Almo, J. A. Gerlt
D-Ribulose 5-Phosphate 3-Epimerase: Functional And Structural Relationships To Members Of The Ribulose-Phosphate Binding (Beta/Alpha)(8)-Barrel Superfamily(, ).
Biochemistry V. 45 2493 2006
PubMed-ID: 16489742  |  Reference-DOI: 10.1021/BI052474M
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - RIBULOSE-PHOSPHATE 3-EPIMERASE
    ChainsA, B, C, D, E, F, G, H, I, J, K, L
    EC Number5.1.3.-
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    Organism ScientificSTREPTOCOCCUS PYOGENES
    Organism Taxid1314
    SynonymD-RIBULOSE 5-PHOSPHATE 3-EPIMERASE

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit ABCDEFGHIJKL
Biological Unit 1 (1x)ABCDEF      
Biological Unit 2 (1x)      GHIJKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 24)

Asymmetric Unit (2, 24)
No.NameCountTypeFull Name
1DX512Ligand/IonD-XYLITOL-5-PHOSPHATE
2ZN12Ligand/IonZINC ION
Biological Unit 1 (1, 6)
No.NameCountTypeFull Name
1DX56Ligand/IonD-XYLITOL-5-PHOSPHATE
2ZN-1Ligand/IonZINC ION
Biological Unit 2 (1, 6)
No.NameCountTypeFull Name
1DX56Ligand/IonD-XYLITOL-5-PHOSPHATE
2ZN-1Ligand/IonZINC ION

(-) Sites  (24, 24)

Asymmetric Unit (24, 24)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:34 , ASP A:36 , HIS A:67 , ASP A:176 , DX5 A:1901BINDING SITE FOR RESIDUE ZN A 1981
02AC2SOFTWAREHIS B:34 , ASP B:36 , HIS B:67 , ASP B:176 , DX5 B:1902BINDING SITE FOR RESIDUE ZN B 1982
03AC3SOFTWAREHIS C:34 , ASP C:36 , HIS C:67 , ASP C:176 , DX5 C:1903BINDING SITE FOR RESIDUE ZN C 1983
04AC4SOFTWAREHIS D:34 , ASP D:36 , HIS D:67 , ASP D:176 , DX5 D:1904BINDING SITE FOR RESIDUE ZN D 1984
05AC5SOFTWAREHIS E:34 , ASP E:36 , HIS E:67 , ASP E:176 , DX5 E:1905BINDING SITE FOR RESIDUE ZN E 1985
06AC6SOFTWAREHIS F:34 , ASP F:36 , HIS F:67 , ASP F:176 , DX5 F:1906BINDING SITE FOR RESIDUE ZN F 1986
07AC7SOFTWAREHIS G:34 , ASP G:36 , HIS G:67 , ASP G:176 , DX5 G:1911BINDING SITE FOR RESIDUE ZN G 1991
08AC8SOFTWAREHIS H:34 , ASP H:36 , HIS H:67 , ASP H:176 , DX5 H:1912BINDING SITE FOR RESIDUE ZN H 1992
09AC9SOFTWAREHIS I:34 , ASP I:36 , HIS I:67 , ASP I:176 , DX5 I:1913BINDING SITE FOR RESIDUE ZN I 1993
10BC1SOFTWAREHIS J:34 , ASP J:36 , HIS J:67 , ASP J:176 , DX5 J:1914BINDING SITE FOR RESIDUE ZN J 1994
11BC2SOFTWAREHIS K:34 , ASP K:36 , HIS K:67 , ASP K:176 , DX5 K:1915BINDING SITE FOR RESIDUE ZN K 1995
12BC3SOFTWAREHIS L:34 , ASP L:36 , HIS L:67 , ASP L:176 , DX5 L:1916BINDING SITE FOR RESIDUE ZN L 1996
13BC4SOFTWARESER A:9 , LEU A:11 , HIS A:34 , ASP A:36 , HIS A:67 , MET A:69 , PRO A:142 , GLY A:143 , PHE A:144 , GLY A:145 , GLY A:146 , ASP A:176 , GLY A:177 , GLY A:178 , ALA A:197 , GLY A:198 , SER A:199 , ZN A:1981 , HOH A:1991 , HOH A:2020 , HOH A:2027 , HOH A:2035 , HOH A:2039BINDING SITE FOR RESIDUE DX5 A 1901
14BC5SOFTWARESER B:9 , LEU B:11 , HIS B:34 , ASP B:36 , MET B:69 , PRO B:142 , GLY B:143 , PHE B:144 , GLY B:145 , GLY B:146 , ASP B:176 , GLY B:177 , GLY B:178 , GLY B:198 , SER B:199 , ZN B:1982 , HOH B:1987 , HOH B:1994 , HOH B:2001 , HOH B:2002 , HOH B:2024BINDING SITE FOR RESIDUE DX5 B 1902
15BC6SOFTWARESER C:9 , LEU C:11 , HIS C:34 , ASP C:36 , MET C:38 , HIS C:67 , MET C:69 , PRO C:142 , GLY C:143 , PHE C:144 , GLY C:145 , GLY C:146 , ASP C:176 , GLY C:177 , GLY C:178 , ALA C:197 , GLY C:198 , SER C:199 , ZN C:1983 , HOH C:1990 , HOH C:1994 , HOH C:1995 , HOH C:2036 , HOH C:2041BINDING SITE FOR RESIDUE DX5 C 1903
16BC7SOFTWARESER D:9 , LEU D:11 , HIS D:34 , ASP D:36 , MET D:69 , PRO D:142 , GLY D:143 , PHE D:144 , GLY D:145 , GLY D:146 , ASP D:176 , GLY D:177 , GLY D:178 , VAL D:196 , ALA D:197 , GLY D:198 , SER D:199 , ZN D:1984 , HOH D:1993 , HOH D:2003 , HOH D:2005 , HOH D:2028BINDING SITE FOR RESIDUE DX5 D 1904
17BC8SOFTWARESER E:9 , LEU E:11 , HIS E:34 , ASP E:36 , HIS E:67 , MET E:69 , PRO E:142 , GLY E:143 , PHE E:144 , GLY E:145 , GLY E:146 , ASP E:176 , GLY E:177 , GLY E:178 , GLY E:198 , SER E:199 , ZN E:1985 , HOH E:1997 , HOH E:2002 , HOH E:2034 , HOH E:2046BINDING SITE FOR RESIDUE DX5 E 1905
18BC9SOFTWARESER F:9 , LEU F:11 , HIS F:34 , ASP F:36 , MET F:38 , MET F:69 , PRO F:142 , GLY F:143 , PHE F:144 , GLY F:145 , GLY F:146 , ASP F:176 , GLY F:177 , GLY F:178 , ALA F:197 , GLY F:198 , SER F:199 , ZN F:1986 , HOH F:1993 , HOH F:2002 , HOH F:2016 , HOH F:2031BINDING SITE FOR RESIDUE DX5 F 1906
19CC1SOFTWARESER G:9 , LEU G:11 , HIS G:34 , ASP G:36 , MET G:38 , MET G:69 , PRO G:142 , GLY G:143 , PHE G:144 , GLY G:145 , GLY G:146 , ASP G:176 , GLY G:177 , GLY G:178 , GLY G:198 , SER G:199 , ZN G:1991 , HOH G:1992 , HOH G:2023 , HOH G:2033 , HOH G:2042BINDING SITE FOR RESIDUE DX5 G 1911
20CC2SOFTWARESER H:9 , LEU H:11 , HIS H:34 , ASP H:36 , MET H:38 , HIS H:67 , MET H:69 , PRO H:142 , GLY H:143 , PHE H:144 , GLY H:145 , GLY H:146 , ASP H:176 , GLY H:177 , GLY H:178 , ALA H:197 , GLY H:198 , SER H:199 , ZN H:1992 , HOH H:1993 , HOH H:1998 , HOH H:2003 , HOH H:2007 , HOH H:2040BINDING SITE FOR RESIDUE DX5 H 1912
21CC3SOFTWARESER I:9 , LEU I:11 , ASP I:36 , PRO I:142 , GLY I:143 , PHE I:144 , GLY I:145 , GLY I:146 , ASP I:176 , GLY I:177 , GLY I:178 , GLY I:198 , SER I:199 , ZN I:1993 , HOH I:2000 , HOH I:2003 , HOH I:2004 , HOH I:2026BINDING SITE FOR RESIDUE DX5 I 1913
22CC4SOFTWARESER J:9 , LEU J:11 , HIS J:34 , ASP J:36 , HIS J:67 , MET J:69 , PRO J:142 , GLY J:143 , PHE J:144 , GLY J:145 , GLY J:146 , ASP J:176 , GLY J:177 , GLY J:178 , ALA J:197 , GLY J:198 , SER J:199 , ZN J:1994 , HOH J:1997 , HOH J:2000 , HOH J:2015 , HOH J:2023 , HOH J:2074BINDING SITE FOR RESIDUE DX5 J 1914
23CC5SOFTWARESER K:9 , LEU K:11 , HIS K:34 , ASP K:36 , MET K:69 , PRO K:142 , GLY K:143 , PHE K:144 , GLY K:145 , GLY K:146 , ASP K:176 , GLY K:177 , GLY K:178 , GLY K:198 , SER K:199 , ZN K:1995 , HOH K:2005 , HOH K:2015 , HOH K:2037 , HOH K:2052BINDING SITE FOR RESIDUE DX5 K 1915
24CC6SOFTWARESER L:9 , LEU L:11 , ASP L:36 , MET L:69 , PRO L:142 , GLY L:143 , PHE L:144 , GLY L:145 , GLY L:146 , ASP L:176 , GLY L:177 , GLY L:178 , ALA L:197 , GLY L:198 , SER L:199 , ZN L:1996 , HOH L:2009 , HOH L:2016 , HOH L:2047BINDING SITE FOR RESIDUE DX5 L 1916

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2FLI)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2FLI)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2FLI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2FLI)

(-) Exons   (0, 0)

(no "Exon" information available for 2FLI)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:217
 aligned with Q9A1H8_STRP1 | Q9A1H8 from UniProtKB/TrEMBL  Length:220

    Alignment length:217
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       
         Q9A1H8_STRP1     3 TLKIAPSILAADYANFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMTIHTESTRHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDNKTIRACYEAGANVFVAGSYLFKASDLVSQVQTLRTALN 219
               SCOP domains d2flia1 A:3-219 D-ribulose-5-phosphate 3-epimerase                                                                                                                                                                        SCOP domains
               CATH domains 2fliA00 A:3-219 Aldolase class I                                                                                                                                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.hhhhhhhhhhhhhhhhhhh...eeeeeee..........hhhhhhhhhh....eeeeeee..hhhhhhhhhhhhh..eeeee.hhh.hhhhhhhhhhhh..eeeeee....hhhhhhhhh....eeeee...........hhhhhhhhhhhhhhhhhh....eeeee......hhhhhhhhh..eeeehhhhhh..hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2fli A   3 TLKIAPSILAADYANFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMTIHTESTRHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDNKTIRACYEAGANVFVAGSYLFKASDLVSQVQTLRTALN 219
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       

Chain B from PDB  Type:PROTEIN  Length:217
 aligned with Q9A1H8_STRP1 | Q9A1H8 from UniProtKB/TrEMBL  Length:220

    Alignment length:217
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       
         Q9A1H8_STRP1     2 STLKIAPSILAADYANFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMTIHTESTRHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDNKTIRACYEAGANVFVAGSYLFKASDLVSQVQTLRTAL 218
               SCOP domains d2flib_ B: automated matches                                                                                                                                                                                              SCOP domains
               CATH domains 2fliB00 B:2-218 Aldolase class I                                                                                                                                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee.hhhhhhhhhhhhhhhhh.....eeeeeee..........hhhhhhhhhh....eeeeeee..hhhhhhhhhhhhh..eeeee.hhh.hhhhhhhhhhhh..eeeeee....hhhhhhhhhhhh.eeeee...........hhhhhhhhhhhhhhhhhh....eeeee......hhhhhhhhh..eeeehhhhhh..hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2fli B   2 STLKIAPSILAADYANFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMTIHTESTRHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDNKTIRACYEAGANVFVAGSYLFKASDLVSQVQTLRTAL 218
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       

Chain C from PDB  Type:PROTEIN  Length:219
 aligned with Q9A1H8_STRP1 | Q9A1H8 from UniProtKB/TrEMBL  Length:220

    Alignment length:219
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211         
         Q9A1H8_STRP1     2 STLKIAPSILAADYANFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMTIHTESTRHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDNKTIRACYEAGANVFVAGSYLFKASDLVSQVQTLRTALNV 220
               SCOP domains d2flic_ C: automated matches                                                                                                                                                                                                SCOP domains
               CATH domains 2fliC00 C:2-220 Aldolase class I                                                                                                                                                                                            CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee.hhhhhhhhhhhhhhhhhhh...eeeeeee..........hhhhhhhhhh....eeeeeee..hhhhhhhhhhhhh..eeeee.hhh.hhhhhhhhhhhh..eeeeee....hhhhhhhhh....eeeee.............hhhhhhhhhhhhhhhhh...eeeee......hhhhhhhhh..eeeehhhhhh..hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2fli C   2 STLKIAPSILAADYANFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMTIHTESTRHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDNKTIRACYEAGANVFVAGSYLFKASDLVSQVQTLRTALNV 220
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211         

Chain D from PDB  Type:PROTEIN  Length:217
 aligned with Q9A1H8_STRP1 | Q9A1H8 from UniProtKB/TrEMBL  Length:220

    Alignment length:217
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       
         Q9A1H8_STRP1     2 STLKIAPSILAADYANFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMTIHTESTRHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDNKTIRACYEAGANVFVAGSYLFKASDLVSQVQTLRTAL 218
               SCOP domains d2flid_ D: automated matches                                                                                                                                                                                              SCOP domains
               CATH domains 2fliD00 D:2-218 Aldolase class I                                                                                                                                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee.hhhhhhhhhhhhhhhhhh....eeeeeee..........hhhhhhhhhh....eeeeeee..hhhhhhhhhhhhh..eeeee.hhh.hhhhhhhhhhhh..eeeeee....hhhhhhhhh....eeeee...........hhhhhhhhhhhhhhhhhhh...eeeee......hhhhhhhhh..eeeehhhhhh..hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2fli D   2 STLKIAPSILAADYANFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMTIHTESTRHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDNKTIRACYEAGANVFVAGSYLFKASDLVSQVQTLRTAL 218
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       

Chain E from PDB  Type:PROTEIN  Length:216
 aligned with Q9A1H8_STRP1 | Q9A1H8 from UniProtKB/TrEMBL  Length:220

    Alignment length:216
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212      
         Q9A1H8_STRP1     3 TLKIAPSILAADYANFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMTIHTESTRHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDNKTIRACYEAGANVFVAGSYLFKASDLVSQVQTLRTAL 218
               SCOP domains d2flie_ E: automated matches                                                                                                                                                                                             SCOP domains
               CATH domains 2fliE00 E:3-218 Aldolase class I                                                                                                                                                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeee.hhhhhhhhhhhhhhhhhhh...eeeeeee..........hhhhhhhhhh....eeeeeee..hhhhhhhhhhhhh..eeeee.hhh.hhhhhhhhhhhh..eeeeee....hhhhhhhhh....eeeee...........hhhhhhhhhhhhhhhhhhh...eeeee......hhhhhhhhh..eeeehhhhhh..hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2fli E   3 TLKIAPSILAADYANFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMTIHTESTRHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDNKTIRACYEAGANVFVAGSYLFKASDLVSQVQTLRTAL 218
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212      

Chain F from PDB  Type:PROTEIN  Length:216
 aligned with Q9A1H8_STRP1 | Q9A1H8 from UniProtKB/TrEMBL  Length:220

    Alignment length:216
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212      
         Q9A1H8_STRP1     3 TLKIAPSILAADYANFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMTIHTESTRHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDNKTIRACYEAGANVFVAGSYLFKASDLVSQVQTLRTAL 218
               SCOP domains d2flif_ F: automated matches                                                                                                                                                                                             SCOP domains
               CATH domains 2fliF00 F:3-218 Aldolase class I                                                                                                                                                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeee.hhhhhhhhhhhhhhhhhhh...eeeeeee..........hhhhhhhhhh....eeeeeee..hhhhhhhhhhhhh..eeeee.hhh.hhhhhhhhhhhh..eeeeee....hhhhhhhhh....eeeee...........hhhhhhhhhhhhhhhhhh....eeeee......hhhhhhhhh..eeeehhhhhh..hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2fli F   3 TLKIAPSILAADYANFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMTIHTESTRHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDNKTIRACYEAGANVFVAGSYLFKASDLVSQVQTLRTAL 218
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212      

Chain G from PDB  Type:PROTEIN  Length:218
 aligned with Q9A1H8_STRP1 | Q9A1H8 from UniProtKB/TrEMBL  Length:220

    Alignment length:218
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211        
         Q9A1H8_STRP1     2 STLKIAPSILAADYANFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMTIHTESTRHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDNKTIRACYEAGANVFVAGSYLFKASDLVSQVQTLRTALN 219
               SCOP domains d2flig_ G: automated matches                                                                                                                                                                                               SCOP domains
               CATH domains 2fliG00 G:2-219 Aldolase class I                                                                                                                                                                                           CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee.hhhhhhhhhhhhhhhhhh....eeeeeee..........hhhhhhhhhh....eeeeeee..hhhhhhhhhhhhh..eeeee.hhh.hhhhhhhhhhhh..eeeeee....hhhhhhhhh....eeeee...........hhhhhhhhhhhhhhhhhhh...eeeee......hhhhhhhhh..eeeehhhhhh..hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2fli G   2 STLKIAPSILAADYANFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMTIHTESTRHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDNKTIRACYEAGANVFVAGSYLFKASDLVSQVQTLRTALN 219
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211        

Chain H from PDB  Type:PROTEIN  Length:216
 aligned with Q9A1H8_STRP1 | Q9A1H8 from UniProtKB/TrEMBL  Length:220

    Alignment length:216
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212      
         Q9A1H8_STRP1     3 TLKIAPSILAADYANFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMTIHTESTRHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDNKTIRACYEAGANVFVAGSYLFKASDLVSQVQTLRTAL 218
               SCOP domains d2flih_ H: automated matches                                                                                                                                                                                             SCOP domains
               CATH domains 2fliH00 H:3-218 Aldolase class I                                                                                                                                                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeee.hhhhhhhhhhhhhhhhh.....eeeeeee..........hhhhhhhhhh....eeeeeee..hhhhhhhhhhhhh..eeeee.hhh.hhhhhhhhhhhh..eeeeee....hhhhhhhhh....eeeee...........hhhhhhhhhhhhhhhhhh....eeeee......hhhhhhhhh..eeeehhhhhh..hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2fli H   3 TLKIAPSILAADYANFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMTIHTESTRHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDNKTIRACYEAGANVFVAGSYLFKASDLVSQVQTLRTAL 218
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212      

Chain I from PDB  Type:PROTEIN  Length:217
 aligned with Q9A1H8_STRP1 | Q9A1H8 from UniProtKB/TrEMBL  Length:220

    Alignment length:217
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       
         Q9A1H8_STRP1     3 TLKIAPSILAADYANFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMTIHTESTRHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDNKTIRACYEAGANVFVAGSYLFKASDLVSQVQTLRTALN 219
               SCOP domains d2flii_ I: automated matches                                                                                                                                                                                              SCOP domains
               CATH domains 2fliI00 I:3-219 Aldolase class I                                                                                                                                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.hhhhhhhhhhhhhhhhhh....eeeeeee..........hhhhhhhhhh....eeeeeee..hhhhhhhhhhhhh..eeeee.....hhhhhhhhhhhh..eeeeee....hhhhhhhhh....eeeee...........hhhhhhhhhhhhhhhhhhh...eeeee......hhhhhhhhh..eeeehhhhhh..hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2fli I   3 TLKIAPSILAADYANFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMTIHTESTRHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDNKTIRACYEAGANVFVAGSYLFKASDLVSQVQTLRTALN 219
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       

Chain J from PDB  Type:PROTEIN  Length:218
 aligned with Q9A1H8_STRP1 | Q9A1H8 from UniProtKB/TrEMBL  Length:220

    Alignment length:218
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211        
         Q9A1H8_STRP1     2 STLKIAPSILAADYANFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMTIHTESTRHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDNKTIRACYEAGANVFVAGSYLFKASDLVSQVQTLRTALN 219
               SCOP domains d2flij_ J: automated matches                                                                                                                                                                                               SCOP domains
               CATH domains 2fliJ00 J:2-219 Aldolase class I                                                                                                                                                                                           CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee.hhhhhhhhhhhhhhhhhhh...eeeeeee..........hhhhhhhhhh....eeeeeee..hhhhhhhhhhhhh..eeeee.hhh.hhhhhhhhhhhh..eeeeee....hhhhhhhhhhhh.eeeee...........hhhhhhhhhhhhhhhhhhh...eeeee......hhhhhhhhh..eeeehhhhhh..hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2fli J   2 STLKIAPSILAADYANFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMTIHTESTRHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDNKTIRACYEAGANVFVAGSYLFKASDLVSQVQTLRTALN 219
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211        

Chain K from PDB  Type:PROTEIN  Length:216
 aligned with Q9A1H8_STRP1 | Q9A1H8 from UniProtKB/TrEMBL  Length:220

    Alignment length:216
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212      
         Q9A1H8_STRP1     3 TLKIAPSILAADYANFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMTIHTESTRHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDNKTIRACYEAGANVFVAGSYLFKASDLVSQVQTLRTAL 218
               SCOP domains d2flik_ K: automated matches                                                                                                                                                                                             SCOP domains
               CATH domains 2fliK00 K:3-218 Aldolase class I                                                                                                                                                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeee.hhhhhhhhhhhhhhhhhh....eeeeeee..........hhhhhhhhhhhh..eeeeeee..hhhhhhhhhhhhh..eeeee.hhh.hhhhhhhhhhhh..eeeeee....hhhhhhhhh....eeeee...........hhhhhhhhhhhhhhhhhhh...eeeee......hhhhhhhhh..eeeehhhhhh..hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2fli K   3 TLKIAPSILAADYANFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMTIHTESTRHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDNKTIRACYEAGANVFVAGSYLFKASDLVSQVQTLRTAL 218
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212      

Chain L from PDB  Type:PROTEIN  Length:218
 aligned with Q9A1H8_STRP1 | Q9A1H8 from UniProtKB/TrEMBL  Length:220

    Alignment length:218
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212        
         Q9A1H8_STRP1     3 TLKIAPSILAADYANFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMTIHTESTRHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDNKTIRACYEAGANVFVAGSYLFKASDLVSQVQTLRTALNV 220
               SCOP domains d2flil_ L: automated matches                                                                                                                                                                                               SCOP domains
               CATH domains 2fliL00 L:3-220 Aldolase class I                                                                                                                                                                                           CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.hhhhhhhhhhhhhhhhhh....eeeeeee..........hhhhhhhhhh....eeeeeee..hhhhhhhhhhhhh..eeeee.hhh.hhhhhhhhhhhh..eeeeee....hhhhhhhhh....eeeee...........hhhhhhhhhhhhhhhhhh....eeeee......hhhhhhhhh..eeeehhhhhh..hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2fli L   3 TLKIAPSILAADYANFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMTIHTESTRHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDNKTIRACYEAGANVFVAGSYLFKASDLVSQVQTLRTALNV 220
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212        

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 12)

Asymmetric Unit

(-) CATH Domains  (1, 12)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
1a2fliC00C:2-220
1b2fliG00G:2-219
1c2fliH00H:3-218
1d2fliK00K:3-218
1e2fliJ00J:2-219
1f2fliL00L:3-220
1g2fliA00A:3-219
1h2fliB00B:2-218
1i2fliD00D:2-218
1j2fliI00I:3-219
1k2fliE00E:3-218
1l2fliF00F:3-218

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2FLI)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L   (Q9A1H8_STRP1 | Q9A1H8)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016853    isomerase activity    Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016857    racemase and epimerase activity, acting on carbohydrates and derivatives    Catalysis of a reaction that alters the configuration of one or more chiral centers in a carbohydrate molecule.
    GO:0004750    ribulose-phosphate 3-epimerase activity    Catalysis of the reaction: D-ribulose 5-phosphate = D-xylulose 5-phosphate.
biological process
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0006098    pentose-phosphate shunt    The glucose-6-phosphate catabolic process in which, coupled to NADPH synthesis, glucose-6-P is oxidized with the formation of carbon dioxide (CO2) and ribulose 5-phosphate; ribulose 5-P then enters a series of reactions interconverting sugar phosphates. The pentose phosphate pathway is a major source of reducing equivalents for biosynthesis reactions and is also important for the conversion of hexoses to pentoses.

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 Related Entries

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