2FIY - JenaLib

Title :   THE CRYSTAL STRUCTURE OF THE FDHE PROTEIN FROM PSEUDOMONAS AERUGINOSA

Authors :   R. Zhang, E. Evdokimova, A. Savchenko, A. Edwards, A. Joachimiak, Midw Center For Structural Genomics (Mcsg)

Date :   30 Dec 05 (Deposition) - 14 Feb 06 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.10

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Fdhe Protein, Pseudomonas Aeruginosa, Structural Genomics, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   R. Zhang, E. Evdokimova, A. Savchenko, A. Edwards, A. Joachimiak
The Crystal Structure Of The Fdhe Protein From Pseudomonas Aeruginosa Pao1
To Be Published
PubMed: search

Compounds

Molecule 1 - PROTEIN FDHE HOMOLOG
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET15B
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	PSEUDOMONAS AERUGINOSA
	Organism Taxid	:	208964
	Strain	:	PAO1

Structural Features

Chains, Units

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (1, 5)

Asymmetric Unit (1, 5)

No.	Name	Count	Type	Full Name
1	FE	5	Ligand/Ion	FE (III) ION

Biological Unit 1 (0, 0)

No.	Name	Count	Type	Full Name
1	FE	-1	Ligand/Ion	FE (III) ION

Biological Unit 2 (0, 0)

No.	Name	Count	Type	Full Name
1	FE	-1	Ligand/Ion	FE (III) ION

Sites (5, 5)

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	CYS A:185 , CYS A:188 , CYS A:211 , CYS A:214	BINDING SITE FOR RESIDUE FE A 401
2	AC2	SOFTWARE	CYS B:185 , CYS B:188 , CYS B:211 , CYS B:214	BINDING SITE FOR RESIDUE FE B 402
3	AC3	SOFTWARE	CYS A:225 , CYS A:228 , CYS A:256 , CYS A:259	BINDING SITE FOR RESIDUE FE A 403
4	AC4	SOFTWARE	CYS B:225 , CYS B:228 , CYS B:256 , CYS B:259	BINDING SITE FOR RESIDUE FE B 404
5	AC5	SOFTWARE	HIS B:20 , HIS B:22 , GLU B:173 , HIS B:219	BINDING SITE FOR RESIDUE FE B 405

SS Bonds (1, 1)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:285
 aligned with FDHE_PSEAE | Q9HV00 from UniProtKB/Swiss-Prot  Length:309

    Alignment length:290
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308
           FDHE_PSEAE    19 PHLHQPSRDLFARRGERLLQLAEGHPMGDYLRLVAGLCRLQQALLDNPPALAPLDPERLRKSREHGMPPLAYDLLVREGAWLPWLDALLAGYPAPANAAVGAALEQLREAEEGQRKAWAIALLSGQFDLLPAALVPFLGAALQVAWSHWLLGLEEGAVVETESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEESKHLAYLSLEHDGQPAEKAVLRAETCPSCQGYLKQFYLEFDRHADALADDLASLALDMRLAEDGYLRRSPNLLLAPGG 308
               SCOP domains d2fiya1 A:19-308 FdhE homolog PA4809                                                                                                                                                                                                                                                               SCOP domains
               CATH domains 2fiyA00 A:19-308 FdhE-like domain                                                                                                                                                                                                                                                                  CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee....hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhh.....hhhhhhhhh.hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh.....................eeeeeee.----..eeeeee.....eee................ee....-........eeee......eeeeeee.......hhhhhhhhhhhhhhhhhhh..ee........... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2fiy A  19 PHLHQPSRDLFARRGERLLQLAEGHPMGDYLRLVAGLCRLQQALLDNPPALAPLDPERLRKSREHGMPPLAYDLLVREGAWLPWLDALLAGYPAPANAAVGAALEQLREAEEGQRKAWAIALLSGQFDLLPAALVPFLGAALQVAWSHWLLGLEEGAVVETESRTLCPACGSPPMAGMIRQ----TGLRYLSCSLCACEWHYVRIKCSHCEESKHLAYLSLEH-GQPAEKAVLRAETCPSCQGYLKQFYLEFDRHADALADDLASLALDMRLAEDGYLRRSPNLLLAPGG 308
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198|    | 208       218       228       238  | |  248       258       268       278       288       298       308
                                                                                                                                                                                                              199  204                                  241 |                                                                 
                                                                                                                                                                                                                                                          243

Chain B from PDB  Type:PROTEIN  Length:281
 aligned with FDHE_PSEAE | Q9HV00 from UniProtKB/Swiss-Prot  Length:309

    Alignment length:291
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307 
           FDHE_PSEAE    18 PPHLHQPSRDLFARRGERLLQLAEGHPMGDYLRLVAGLCRLQQALLDNPPALAPLDPERLRKSREHGMPPLAYDLLVREGAWLPWLDALLAGYPAPANAAVGAALEQLREAEEGQRKAWAIALLSGQFDLLPAALVPFLGAALQVAWSHWLLGLEEGAVVETESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEESKHLAYLSLEHDGQPAEKAVLRAETCPSCQGYLKQFYLEFDRHADALADDLASLALDMRLAEDGYLRRSPNLLLAPGG 308
               SCOP domains d2fiyb_ B: FdhE homolog PA4809                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains 2fiyB00 B:18-308 FdhE-like domain                                                                                                                                                                                                                                                                   CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhh.....hhhhhhhhh.hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.-.......--..........eeeeeee.----..eeeeee.....eee...............eee..---..hhhhh.eeeeee....eeeeeee.......hhhhhhhhhhhhhhhhhhh..ee........... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2fiy B  18 PPHLHQPSRDLFARRGERLLQLAEGHPMGDYLRLVAGLCRLQQALLDNPPALAPLDPERLRKSREHGMPPLAYDLLVREGAWLPWLDALLAGYPAPANAAVGAALEQLREAEEGQRKAWAIALLSGQFDLLPAALVPFLGAALQVAWSHWLLGL-EGAVVET--RTLCPACGSPPMAGMIRQ----TGLRYLSCSLCACEWHYVRIKCSHCEESKHLAYLSL---GQPAEKAVLRAETCPSCQGYLKQFYLEFDRHADALADDLASLALDMRLAEDGYLRRSPNLLLAPGG 308
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167   | | 177 |  |  187       197 |    |207       217       227       237 |   | 247       257       267       277       287       297       307 
                                                                                                                                                                                   171 |   179  |              199  204                                239 243                                                                 
                                                                                                                                                                                     173      182

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 2)

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Multi-domain proteins (alpha and beta) (2421)

Fold: FdhE-like (1)

Superfamily: FdhE-like (1)

Family: FdhE-like (1)

Protein domain: FdhE homolog PA4809 (1)

Pseudomonas aeruginosa [TaxId: 287] (1)

1a	d2fiya1	A:19-308
1b	d2fiyb_	B:

CATH Domains (1, 2)

Pfam Domains (0, 0)

Gene Ontology (1, 1)

Asymmetric Unit(show GO term definitions)

Chain A,B (FDHE_PSEAE | Q9HV00)

cellular component
	GO:0005737		cytoplasm

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