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Title :   THE CRYSTAL STRUCTURE OF DJ-1 SUPERFAMILY PROTEIN ATU0886 FROM AGROBACTERIUM TUMEFACIENS

Authors :   M. T. Cymborowski, S. Wang, M. Chruszcz, I. Shumilin, J. Gu, X. Xu, A. M. E A. Savchenko, A. Joachimiak, W. Minor, Midwest Center For Structu Genomics (Mcsg)

Date :   16 Dec 05 (Deposition) - 31 Jan 06 (Release) - 05 Oct 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.70

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C  (2x)

Keywords :   Structural Genomics, Protein Structure Initiative, Psi, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. T. Cymborowski, S. Wang, M. Chruszcz, I. Shumilin, J. Gu, X. Xu, A. M. Edwards, A. Savchenko, W. Minor
The Crystal Structure Of Dj-1 Superfamily Protein Atu0886 From Agrobacterium Tumefaciens
To Be Published
PubMed: search

Molecule 1 - CONSERVED HYPOTHETICAL PROTEIN
	Chains	:	A, B, C
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET15B
	Expression System Strain	:	BL21-GOLD (DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	ATU0886
	Organism Scientific	:	AGROBACTERIUM TUMEFACIENS
	Organism Taxid	:	176299
	Strain	:	C58

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (2x)	:			C

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 12)

No.	Name	Count	Type	Full Name
1	GOL	1	Ligand/Ion	GLYCEROL
2	MSE	9	Mod. Amino Acid	SELENOMETHIONINE
3	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 1 (3, 8)

No.	Name	Count	Type	Full Name
1	GOL	1	Ligand/Ion	GLYCEROL
2	MSE	6	Mod. Amino Acid	SELENOMETHIONINE
3	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 2 (2, 8)

No.	Name	Count	Type	Full Name
1	GOL	-1	Ligand/Ion	GLYCEROL
2	MSE	6	Mod. Amino Acid	SELENOMETHIONINE
3	SO4	2	Ligand/Ion	SULFATE ION

Asymmetric Unit (3, 3)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	LYS A:49 , ARG B:25 , HOH B:2023 , HOH B:2059 , HOH B:2116	BINDING SITE FOR RESIDUE SO4 B 1001
2	AC2	SOFTWARE	ARG C:25 , LYS C:49 , HOH C:1056 , HOH C:1068 , HOH C:1084	BINDING SITE FOR RESIDUE SO4 C 1002
3	AC3	SOFTWARE	TYR A:27 , TRP B:15 , GLY B:72 , LEU B:73 , GLU B:76 , CYS B:101 , ALA B:102	BINDING SITE FOR RESIDUE GOL B 2001

(no "SS Bond" information available for 2FEX)

(no "Cis Peptide Bond" information available for 2FEX)

(no "SAP(SNP)/Variant" information available for 2FEX)

(no "PROSITE Motif" information available for 2FEX)

(no "Exon" information available for 2FEX)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:188
 aligned with A9CJS5_AGRFC | A9CJS5 from UniProtKB/TrEMBL  Length:188

    Alignment length:188
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180        
         A9CJS5_AGRFC     1 MTRIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGMPVTSMGGLKVTPDTSYDALDPVDIDALVIPGGLSWEKGTAADLGGLVKRFRDRDRLVAGICAAASALGGTGVLNDVAHTGNALASHKAYPAYRGEAHYRDQPRAVSDGGVVTAAGSAPVSFAVEILKSLGLFGPEAEAELQIFAAEHR 188
               SCOP domains d2fexa1 A:1-188 Hypothetical protein Atu0886                                                                                                                                                 SCOP domains
               CATH domains -2fexA00 A:2-188  [code=3.40.50.880, no name defined]                                                                                                                                        CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.........hhhhhhhhhhhh..eeeeee.....ee.....eee..ee.hhh......eeee.............hhhhhhhhhhh..eeeeehhhhhhhhhh...........hhhhhhh.....hhhhh......eee..eeee...hhhhhhhhhhhhh...hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2fex A   1 mTRIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGmPVTSmGGLKVTPDTSYDALDPVDIDALVIPGGLSWEKGTAADLGGLVKRFRDRDRLVAGICAAASALGGTGVLNDVAHTGNALASHKAYPAYRGEAHYRDQPRAVSDGGVVTAAGSAPVSFAVEILKSLGLFGPEAEAELQIFAAEHR 188
                            |       10        20        30        40    |   50        60        70        80        90       100       110       120       130       140       150       160       170       180        
                            |                                     40-MSE|                                                                                                                                               
                            1-MSE                                      45-MSE

Chain B from PDB  Type:PROTEIN  Length:188
 aligned with A9CJS5_AGRFC | A9CJS5 from UniProtKB/TrEMBL  Length:188

    Alignment length:188
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180        
         A9CJS5_AGRFC     1 MTRIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGMPVTSMGGLKVTPDTSYDALDPVDIDALVIPGGLSWEKGTAADLGGLVKRFRDRDRLVAGICAAASALGGTGVLNDVAHTGNALASHKAYPAYRGEAHYRDQPRAVSDGGVVTAAGSAPVSFAVEILKSLGLFGPEAEAELQIFAAEHR 188
               SCOP domains d2fexb_ B: Hypothetical protein Atu0886                                                                                                                                                      SCOP domains
               CATH domains -2fexB00 B:2-188  [code=3.40.50.880, no name defined]                                                                                                                                        CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.........hhhhhhhhhhhh..eeeeee.....ee.....eee..ee.hhhhhhhh.eeee.............hhhhhhhhhhh..eeeeehhhhhhhhhh...........hhhhhhh.....hhhhh......eee..eeee...hhhhhhhhhhhhh...hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2fex B   1 mTRIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGmPVTSmGGLKVTPDTSYDALDPVDIDALVIPGGLSWEKGTAADLGGLVKRFRDRDRLVAGICAAASALGGTGVLNDVAHTGNALASHKAYPAYRGEAHYRDQPRAVSDGGVVTAAGSAPVSFAVEILKSLGLFGPEAEAELQIFAAEHR 188
                            |       10        20        30        40    |   50        60        70        80        90       100       110       120       130       140       150       160       170       180        
                            1-MSE                                 40-MSE|                                                                                                                                               
                                                                       45-MSE

Chain C from PDB  Type:PROTEIN  Length:188
 aligned with A9CJS5_AGRFC | A9CJS5 from UniProtKB/TrEMBL  Length:188

    Alignment length:188
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180        
         A9CJS5_AGRFC     1 MTRIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGMPVTSMGGLKVTPDTSYDALDPVDIDALVIPGGLSWEKGTAADLGGLVKRFRDRDRLVAGICAAASALGGTGVLNDVAHTGNALASHKAYPAYRGEAHYRDQPRAVSDGGVVTAAGSAPVSFAVEILKSLGLFGPEAEAELQIFAAEHR 188
               SCOP domains d2fexc_ C: Hypothetical protein Atu0886                                                                                                                                                      SCOP domains
               CATH domains -2fexC00 C:2-188  [code=3.40.50.880, no name defined]                                                                                                                                        CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.........hhhhhhhhhhh...eeeeee.....ee.....ee...ee..........eeee.............hhhhhhhhhhh..eeeeehhhhhhhhhh...........hhhhhh......hhhhh......eee..eeee...hhhhhhhhhhhhh...hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2fex C   1 mTRIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGmPVTSmGGLKVTPDTSYDALDPVDIDALVIPGGLSWEKGTAADLGGLVKRFRDRDRLVAGICAAASALGGTGVLNDVAHTGNALASHKAYPAYRGEAHYRDQPRAVSDGGVVTAAGSAPVSFAVEILKSLGLFGPEAEAELQIFAAEHR 188
                            |       10        20        30        40    |   50        60        70        80        90       100       110       120       130       140       150       160       170       180        
                            1-MSE                                 40-MSE|                                                                                                                                               
                                                                       45-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: Flavodoxin-like (1057)

Superfamily: Class I glutamine amidotransferase-like (173)

Family: DJ-1/PfpI (54)

Protein domain: Hypothetical protein Atu0886 (1)

Agrobacterium tumefaciens [TaxId: 358] (1)

1a	d2fexa1	A:1-188
1b	d2fexb_	B:
1c	d2fexc_	C:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: [code=3.40.50.880, no name defined] (97)

C58 (Agrobacterium tumefaciens str) (1)

1a	2fexA00	A:2-188
1b	2fexB00	B:2-188
1c	2fexC00	C:2-188

(no "Pfam Domain" information available for 2FEX)

Asymmetric Unit(hide GO term definitions)

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Asymmetric Unit
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