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(-) Description

Title :  STRUCTURE OF A PUTATIVE RIBOSOMAL-PROTEIN-SERINE ACETYLTRANSFERASE FROM VIBRIO CHOLERAE.
 
Authors :  M. E. Cuff, H. Li, S. Moy, A. Joachimiak, Midwest Center For Structur Genomics (Mcsg)
Date :  12 Dec 05  (Deposition) - 28 Feb 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Vibrio Cholerae, Serine Acetyltransferase, Ribosomal-Protein, Structural Genomics, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. E. Cuff, H. Li, S. Moy, J. Watson, A. Cipriani, A. Joachimiak
Crystal Structure Of An Acetyltransferase Protein From Vibrio Cholerae Strain N16961.
Proteins V. 69 422 2007
PubMed-ID: 17623843  |  Reference-DOI: 10.1002/PROT.21417

(-) Compounds

Molecule 1 - RIBOSOMAL-PROTEIN-SERINE ACETYLTRANSFERASE, PUTATIVE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: VC1889
    Organism Scientific: VIBRIO CHOLERAE O1 BIOVAR ELTOR
    Organism Taxid: 243277
    Strain: N16961

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 16)

Asymmetric Unit (3, 16)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2MSE3Mod. Amino AcidSELENOMETHIONINE
3NO312Ligand/IonNITRATE ION
Biological Unit 1 (3, 32)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2MSE6Mod. Amino AcidSELENOMETHIONINE
3NO324Ligand/IonNITRATE ION

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLN A:33 , THR A:34 , HIS A:36 , GLN A:37 , ARG A:75BINDING SITE FOR RESIDUE NO3 A 301
02AC2SOFTWARETYR A:100 , TRP A:101 , ILE A:102 , GLN A:107 , SER A:143 , LEU A:146 , HOH A:409 , HOH A:487BINDING SITE FOR RESIDUE NO3 A 302
03AC3SOFTWAREGLN A:107 , GLY A:110 , TYR A:111 , GLY A:112 , LYS A:113 , ARG A:149BINDING SITE FOR RESIDUE NO3 A 303
04AC4SOFTWAREGLN A:27 , ARG A:30 , GLN A:31 , LYS A:113 , GLU A:114 , THR A:117 , HOH A:437 , HOH A:622BINDING SITE FOR RESIDUE NO3 A 304
05AC5SOFTWARELEU A:60 , ARG A:154 , LEU A:157 , ILE A:172 , HOH A:501 , HOH A:515 , HOH A:617 , HOH A:627BINDING SITE FOR RESIDUE NO3 A 305
06AC6SOFTWAREPRO A:159 , ASN A:160 , PRO A:168 , LYS A:169 , ALA A:170 , HOH A:565 , HOH A:618 , HOH A:623BINDING SITE FOR RESIDUE NO3 A 306
07AC7SOFTWAREPRO A:3 , ARG A:59 , ALA A:145 , LEU A:148 , HOH A:408 , HOH A:423 , HOH A:522BINDING SITE FOR RESIDUE NO3 A 307
08AC8SOFTWAREGLU A:88 , HOH A:414 , HOH A:473 , HOH A:502 , HOH A:526 , HOH A:597 , HOH A:614BINDING SITE FOR RESIDUE NO3 A 308
09AC9SOFTWAREMSE A:83 , ASN A:87 , GLY A:99 , TYR A:100 , TRP A:101 , HOH A:485 , HOH A:636 , HOH A:639BINDING SITE FOR RESIDUE NO3 A 309
10BC1SOFTWARETYR A:68 , HIS A:91 , HOH A:440 , HOH A:484 , HOH A:520BINDING SITE FOR RESIDUE NO3 A 310
11BC2SOFTWAREGLN A:31 , SER A:32 , GLY A:103 , ASP A:104 , ARG A:105 , TYR A:106 , HOH A:424 , HOH A:428 , HOH A:541BINDING SITE FOR RESIDUE NO3 A 311
12BC3SOFTWAREPHE A:5 , ILE A:7 , ARG A:105 , PHE A:122 , HOH A:425 , HOH A:533 , HOH A:539 , HOH A:596BINDING SITE FOR RESIDUE NO3 A 312
13BC4SOFTWAREGLU A:24 , GLN A:27 , CYS A:28 , THR A:79 , LEU A:80 , HOH A:570 , HOH A:586BINDING SITE FOR RESIDUE GOL A 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2FCK)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2FCK)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2FCK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2FCK)

(-) Exons   (0, 0)

(no "Exon" information available for 2FCK)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:174
 aligned with A0A0H3AIE8_V | A0A0H3AIE8 from UniProtKB/TrEMBL  Length:178

    Alignment length:178
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170        
         A0A0H3AIE8_V     1 MTPDFQIVTQRLQLRLITADEAEELVQCIRQSQTLHQWVDWCHALFSQQEAEQFIQATRLNWVKAEAYGFGVFERQTQTLVGMVAINEFYHTFNMASLGYWIGDRYQRQGYGKEALTALILFCFERLELTRLEIVCDPENVPSQALALRCGANREQLAPNRFLYAGEPKAGIVFSLIP 178
               SCOP domains d2fcka1 A:1-178 Putative ribosomal-protei    n-serine acetyltransferase VC1889                                                                                                     SCOP domains
               CATH domains -2fckA00 A:2-178  [code=3.40.630.30, no n    ame defined]                                                                                                                          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......ee...eeee..hhhhhhhhhhhhhh..hhhhh...----.hhhhhhhhhhhhhhhhhh...eeeeeee.....eeeeeeeeeeehhh.eeeeeeeehhhhhh.hhhhhhhhhhhhhhhhh....eeeeee...hhhhhhhhhhh..eeeeeeeeeeee..eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2fck A   1 mTPDFQIVTQRLQLRLITADEAEELVQCIRQSQTLHQWVDW----FSQQEAEQFIQATRLNWVKAEAYGFGVFERQTQTLVGmVAINEFYHTFNmASLGYWIGDRYQRQGYGKEALTALILFCFERLELTRLEIVCDPENVPSQALALRCGANREQLAPNRFLYAGEPKAGIVFSLIP 178
                            |       10        20        30        40|    |  50        60        70        80  |     90    |  100       110       120       130       140       150       160       170        
                            |                                      41   46                                   83-MSE      95-MSE                                                                               
                            1-MSE                                                                                                                                                                             


Chain A from PDB  Type:PROTEIN  Length:174
 aligned with Q9KQV9_VIBCH | Q9KQV9 from UniProtKB/TrEMBL  Length:178

    Alignment length:178
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170        
         Q9KQV9_VIBCH     1 MTPDFQIVTQRLQLRLITADEAEELVQCIRQSQTLHQWVDWCHALFSQQEAEQFIQATRLNWVKAEAYGFGVFERQTQTLVGMVAINEFYHTFNMASLGYWIGDRYQRQGYGKEALTALILFCFERLELTRLEIVCDPENVPSQALALRCGANREQLAPNRFLYAGEPKAGIVFSLIP 178
               SCOP domains d2fcka1 A:1-178 Putative ribosomal-protei    n-serine acetyltransferase VC1889                                                                                                     SCOP domains
               CATH domains -2fckA00 A:2-178  [code=3.40.630.30, no n    ame defined]                                                                                                                          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......ee...eeee..hhhhhhhhhhhhhh..hhhhh...----.hhhhhhhhhhhhhhhhhh...eeeeeee.....eeeeeeeeeeehhh.eeeeeeeehhhhhh.hhhhhhhhhhhhhhhhh....eeeeee...hhhhhhhhhhh..eeeeeeeeeeee..eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2fck A   1 mTPDFQIVTQRLQLRLITADEAEELVQCIRQSQTLHQWVDW----FSQQEAEQFIQATRLNWVKAEAYGFGVFERQTQTLVGmVAINEFYHTFNmASLGYWIGDRYQRQGYGKEALTALILFCFERLELTRLEIVCDPENVPSQALALRCGANREQLAPNRFLYAGEPKAGIVFSLIP 178
                            |       10        20        30        40|    |  50        60        70        80  |     90    |  100       110       120       130       140       150       160       170        
                            1-MSE                                  41   46                                   83-MSE      95-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2FCK)

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)
Chain A   (Q9KQV9_VIBCH | Q9KQV9)
molecular function
    GO:0008080    N-acetyltransferase activity    Catalysis of the transfer of an acetyl group to a nitrogen atom on the acceptor molecule.
    GO:0016407    acetyltransferase activity    Catalysis of the transfer of an acetyl group to an acceptor molecule.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0006474    N-terminal protein amino acid acetylation    The acetylation of the N-terminal amino acid of proteins.
    GO:0006464    cellular protein modification process    The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications) occurring at the level of an individual cell. Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification).
    GO:0042254    ribosome biogenesis    A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis.

Chain A   (A0A0H3AIE8_V | A0A0H3AIE8)

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