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(-) Description

Title :  STRUCTURE OF SMALL TOPRIM DOMAIN PROTEIN FROM BACILLUS STEAROTHERMOPHILUS.
 
Authors :  P. Rezacova, Y. Chen, D. Borek, F. Collart, A. Joachimiak, Z. Otwinowsk Center For Structural Genomics (Mcsg)
Date :  12 Dec 05  (Deposition) - 24 Jan 06  (Release) - 24 Oct 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.30
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  B (1x),C (1x)
Keywords :  Toprim Domain, Structural Genomics, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Rezacova, D. Borek, S. F. Moy, A. Joachimiak, Z. Otwinowski
Crystal Structure And Putative Function Of Small Toprim Domain-Containing Protein From Bacillus Stearothermophilus.
Proteins V. 70 311 2008
PubMed-ID: 17705269  |  Reference-DOI: 10.1002/PROT.21511

(-) Compounds

Molecule 1 - SMALL TOPRIM DOMAIN PROTEIN
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: RBSTP2199
    Organism Scientific: GEOBACILLUS STEAROTHERMOPHILUS
    Organism Taxid: 1422

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): A  
Biological Unit 2 (1x):  B 
Biological Unit 3 (1x):   C
Biological Unit 4 (1x):  B (1x)C (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric Unit (3, 5)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2MES1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
3SO42Ligand/IonSULFATE ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1GOL-1Ligand/IonGLYCEROL
2MES-1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
3SO4-1Ligand/IonSULFATE ION
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2MES-1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
3SO4-1Ligand/IonSULFATE ION
Biological Unit 3 (2, 3)
No.NameCountTypeFull Name
1GOL-1Ligand/IonGLYCEROL
2MES1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
3SO42Ligand/IonSULFATE ION
Biological Unit 4 (1, 2)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2MES-1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
3SO4-1Ligand/IonSULFATE ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP C:95 , HIS C:96 , GLN C:99 , ARG C:103BINDING SITE FOR RESIDUE SO4 C 501
2AC2SOFTWAREHOH B:492 , LYS C:65 , ARG C:68 , ARG C:109 , HOH C:626BINDING SITE FOR RESIDUE SO4 C 502
3AC3SOFTWAREHOH B:464 , HOH B:471 , GLU C:11 , GLY C:12 , ASP C:58 , ASP C:60 , GLU C:61 , ALA C:62 , ARG C:87 , GLU C:88 , HOH C:729BINDING SITE FOR RESIDUE MES C 601
4AC4SOFTWARELEU B:102 , ARG B:103 , HOH B:413 , GLU C:25 , PRO C:26 , VAL C:27 , ILE C:29BINDING SITE FOR RESIDUE GOL B 401
5AC5SOFTWAREASN B:24 , ASP B:107 , VAL B:108 , VAL C:28 , ILE C:29 , HOH C:602 , HOH C:629BINDING SITE FOR RESIDUE GOL B 403

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2FCJ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2FCJ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2FCJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2FCJ)

(-) Exons   (0, 0)

(no "Exon" information available for 2FCJ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:114
 aligned with Q5KVJ9_GEOKA | Q5KVJ9 from UniProtKB/TrEMBL  Length:119

    Alignment length:114
                                    10        20        30        40        50        60        70        80        90       100       110    
         Q5KVJ9_GEOKA     1 MRRVEKVIIVEGRSDKQKVAAVLNEPVVIVCTNGTISDARLEELADELEGCDVYVLADADEAGEKLRRQFRRMFPEAEHLYIDRAYREVAAAPPWHLAQVLLRARFDVRIESLM 114
               SCOP domains d2fcja1 A:1-114 Hypothetical protein RBSTP2199                                                                     SCOP domains
               CATH domains 2fcjA00 A:1-114 Toprim domain                                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeeee.hhhhhhhhhhhh....eeee.....hhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhh...eee............hhhhhhhhhhhh....hhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 2fcj A   1 MRRVEKVIIVEGRSDKQKVAAVLNEPVVIVCTNGTISDARLEELADELEGYDVYLLADADEAGEKLRRQFRRMFPEAEHLYIDRAYREVAAAPIWHLAQVLLRARFDVRIESLM 114
                                    10        20        30        40        50        60        70        80        90       100       110    


Chain B from PDB  Type:PROTEIN  Length:118
 aligned with Q5KVJ9_GEOKA | Q5KVJ9 from UniProtKB/TrEMBL  Length:119

    Alignment length:118
                                    11        21        31        41        51        61        71        81        91       101       111        
         Q5KVJ9_GEOKA     2 RRVEKVIIVEGRSDKQKVAAVLNEPVVIVCTNGTISDARLEELADELEGCDVYVLADADEAGEKLRRQFRRMFPEAEHLYIDRAYREVAAAPPWHLAQVLLRARFDVRIESLMRGRGE 119
               SCOP domains d2fcjb_ B: Hypothetical protein RBSTP2199                                                                              SCOP domains
               CATH domains 2fcjB00 B:2-119 Toprim domain                                                                                          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee.hhhhhhhhhhhh....eeee.....hhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhh...eee..hhhhhhhhhhhhhhhhhhhhhh....hhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                 2fcj B   2 RRVEKVIIVEGRSDKQKVAAVLNEPVVIVCTNGTISDARLEELADELEGYDVYLLADADEAGEKLRRQFRRMFPEAEHLYIDRAYREVAAAPIWHLAQVLLRARFDVRIESLMRGRGE 119
                                    11        21        31        41        51        61        71        81        91       101       111        


Chain C from PDB  Type:PROTEIN  Length:116
 aligned with Q5KVJ9_GEOKA | Q5KVJ9 from UniProtKB/TrEMBL  Length:119

    Alignment length:116
                                    12        22        32        42        52        62        72        82        92       102       112      
         Q5KVJ9_GEOKA     3 RVEKVIIVEGRSDKQKVAAVLNEPVVIVCTNGTISDARLEELADELEGCDVYVLADADEAGEKLRRQFRRMFPEAEHLYIDRAYREVAAAPPWHLAQVLLRARFDVRIESLMRGRG 118
               SCOP domains d2fcjc_ C: Hypothetical protein RBSTP2199                                                                            SCOP domains
               CATH domains 2fcjC00 C:3-118 Toprim domain                                                                                        CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee.hhhhhhhhhhhh....eeee.....hhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhh...eee..hhhhhhhhhhhhhhhhhhhhhh....hhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
                 2fcj C   3 RVEKVIIVEGRSDKQKVAAVLNEPVVIVCTNGTISDARLEELADELEGYDVYLLADADEAGEKLRRQFRRMFPEAEHLYIDRAYREVAAAPIWHLAQVLLRARFDVRIESLMRGRG 118
                                    12        22        32        42        52        62        72        82        92       102       112
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 3)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2FCJ)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C   (Q5KVJ9_GEOKA | Q5KVJ9)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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