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(-) Description

Title :  STRUCTURAL GENOMICS; THE CRYSTAL STRUCTURE OF THE HYPOTHETICAL MEMBRANE SPANNING PROTEIN FROM BACILLUS CEREUS
 
Authors :  R. Zhang, M. Zhou, S. Ginell, J. Abdullah, F. Collart, A. Joachimiak, Mi Center For Structural Genomics (Mcsg)
Date :  08 Dec 05  (Deposition) - 24 Jan 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.99
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  A (2x),B (1x),C (2x)
Biol. Unit 3:  A,B,C  (2x)
Keywords :  Structural Genomics, Membrane Protein, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Zhang, M. Zhou, S. Ginell, J. Abdullah, F. Collart, A. Joachimiak
The Crystal Structure Of The Hypothetical Membrane Spanning Protein From Bacillus Cereus
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL MEMBRANE SPANNING PROTEIN
    Atcc: 14579
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Plasmid: PDM68
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Organism Scientific: BACILLUS CEREUS
    Organism Taxid: 1396

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): ABC
Biological Unit 2 (2x): A (2x)B (1x)C (2x)
Biological Unit 3 (2x): ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2FB5)

(-) Sites  (0, 0)

(no "Site" information available for 2FB5)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2FB5)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2FB5)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2FB5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2FB5)

(-) Exons   (0, 0)

(no "Exon" information available for 2FB5)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:204
 aligned with Q812L9_BACCR | Q812L9 from UniProtKB/TrEMBL  Length:201

    Alignment length:204
                               1                                                                                                                                                                                                        
                               |     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197    
         Q812L9_BACCR     - ---MHEWGLSEELKIQTKQMIEIAEKELSIMRNAIDKEDECILCKMEDIHHMLANVQTLAATYYIQAYLSPYTESSSFITTAIQHLSARKHGALIVVERNETLEALIQTGTTLNAHLTAPLLESIFYPGNPLHDGAVLVKNNHIVSAANILPLTKSTEVDPELGTRHRAAIGLSEKSDALILVVSEETGRTSFALNGILYTISL 201
               SCOP domains ---d2fb5a1 A:5-205 Hypothetical protein BC4920 (YojJ)                                                                                                                                                        SCOP domains
               CATH domains 2fb5A01 A:2-73 YojJ-like                                                2fb5A02 A:74-205 YojJ-like (1                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh..eeeee.............eeeeee.hhhhhhhhh.........eeeee..eeeeeee..............hhhhhhhhhhhh....eeeee......eeeee..eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2fb5 A   2 SNAMHEWGLSEELKIQTKQMIEIAEKELSIMRNAIDKEDECILCKMEDIHHMLANVQTLAATYYIQAYLSPYTESSSFITTAIQHLSARKHGALIVVERNETLEALIQTGTTLNAHLTAPLLESIFYPGNPLHDGAVLVKNNHIVSAANILPLTKSTEVDPELGTRHRAAIGLSEKSDALILVVSEETGRTSFALNGILYTISL 205
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201    


Chain B from PDB  Type:PROTEIN  Length:204
 aligned with Q812L9_BACCR | Q812L9 from UniProtKB/TrEMBL  Length:201

    Alignment length:204
                               1                                                                                                                                                                                                        
                               |     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197    
         Q812L9_BACCR     - ---MHEWGLSEELKIQTKQMIEIAEKELSIMRNAIDKEDECILCKMEDIHHMLANVQTLAATYYIQAYLSPYTESSSFITTAIQHLSARKHGALIVVERNETLEALIQTGTTLNAHLTAPLLESIFYPGNPLHDGAVLVKNNHIVSAANILPLTKSTEVDPELGTRHRAAIGLSEKSDALILVVSEETGRTSFALNGILYTISL 201
               SCOP domains d2fb5b_ B: Hypothetical protein BC4920 (YojJ)                                                                                                                                                                SCOP domains
               CATH domains 2fb5B01 B:2-73 YojJ-like                                                2fb5B02 B:74-205 YojJ-like (1                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh...eeeee.............eeeeee.hhhhhhhhh.........eeeee..eeeeeee..............hhhhhhhhhhhh....eeeee......eeeee..eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2fb5 B   2 SNAMHEWGLSEELKIQTKQMIEIAEKELSIMRNAIDKEDECILCKMEDIHHMLANVQTLAATYYIQAYLSPYTESSSFITTAIQHLSARKHGALIVVERNETLEALIQTGTTLNAHLTAPLLESIFYPGNPLHDGAVLVKNNHIVSAANILPLTKSTEVDPELGTRHRAAIGLSEKSDALILVVSEETGRTSFALNGILYTISL 205
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201    


Chain C from PDB  Type:PROTEIN  Length:204
 aligned with Q812L9_BACCR | Q812L9 from UniProtKB/TrEMBL  Length:201

    Alignment length:204
                               1                                                                                                                                                                                                        
                               |     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197    
         Q812L9_BACCR     - ---MHEWGLSEELKIQTKQMIEIAEKELSIMRNAIDKEDECILCKMEDIHHMLANVQTLAATYYIQAYLSPYTESSSFITTAIQHLSARKHGALIVVERNETLEALIQTGTTLNAHLTAPLLESIFYPGNPLHDGAVLVKNNHIVSAANILPLTKSTEVDPELGTRHRAAIGLSEKSDALILVVSEETGRTSFALNGILYTISL 201
               SCOP domains d2fb5c_ C: Hypothetical protein BC4920 (YojJ)                                                                                                                                                                SCOP domains
               CATH domains 2fb5C01 C:2-73 YojJ-like                                                2fb5C02 C:74-205 YojJ-like (1                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh..eeeee.............eeeeee.hhhhhhhhh.........eeeee..eeeeeee..............hhhhhhhhhhhh....eeeee......eeeee..eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2fb5 C   2 SNAMHEWGLSEELKIQTKQMIEIAEKELSIMRNAIDKEDECILCKMEDIHHMLANVQTLAATYYIQAYLSPYTESSSFITTAIQHLSARKHGALIVVERNETLEALIQTGTTLNAHLTAPLLESIFYPGNPLHDGAVLVKNNHIVSAANILPLTKSTEVDPELGTRHRAAIGLSEKSDALILVVSEETGRTSFALNGILYTISL 205
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (2, 6)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2FB5)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2FB5)

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