2FB2 - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   STRUCTURE OF THE MOAA ARG17/266/268/ALA TRIPLE MUTANT

Authors :   P. Haenzelmann, H. Schindelin

Date :   08 Dec 05 (Deposition) - 09 May 06 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.25

Chains :   Asym./Biol. Unit : A,B

Keywords :   S-Adenosylmethionine, Tim Barrel, [4Fe-4S] Clusters, Ligand Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   P. Haenzelmann, H. Schindelin
Binding Of 5'-Gtp To The C-Terminal Fes Cluster Of The Radical S-Adenosylmethionine Enzyme Moaa Provides Insights Into Its Mechanism
Proc. Natl. Acad. Sci. Usa V. 103 6829 2006
PubMed-ID: 16632608 | Reference-DOI: 10.1073/PNAS.0510711103

Molecule 1 - MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN A
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	MOAA
	Mutation	:	YES
	Organism Scientific	:	STAPHYLOCOCCUS AUREUS
	Organism Taxid	:	1280
	Synonym	:	MOAA

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (3, 8)

No.	Name	Count	Type	Full Name
1	SAM	2	Ligand/Ion	S-ADENOSYLMETHIONINE
2	SF4	4	Ligand/Ion	IRON/SULFUR CLUSTER
3	SO4	2	Ligand/Ion	SULFATE ION

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	CYS A:28 , TYR A:30 , SER A:126 , LEU A:127 , ASP A:128 , PHE A:135 , HOH A:510	BINDING SITE FOR RESIDUE SO4 A 403
2	AC2	SOFTWARE	TYR B:30 , SER B:126 , LEU B:127 , ASP B:128 , PHE B:135	BINDING SITE FOR RESIDUE SO4 B 403
3	AC3	SOFTWARE	TYR A:30 , THR A:73 , GLY A:75 , GLU A:76 , THR A:102 , THR A:103 , SER A:126 , VAL A:167 , PHE A:196 , MET A:197 , SF4 A:401 , HOH A:615	BINDING SITE FOR RESIDUE SAM A 501
4	AC4	SOFTWARE	TYR B:30 , THR B:73 , GLY B:75 , GLU B:76 , THR B:102 , THR B:103 , ASN B:104 , SER B:126 , VAL B:167 , MET B:197 , SF4 B:401 , HOH B:510	BINDING SITE FOR RESIDUE SAM B 501
5	AC5	SOFTWARE	CYS A:24 , PHE A:26 , CYS A:28 , CYS A:31 , MET A:32 , ASN A:104 , SAM A:501	BINDING SITE FOR RESIDUE SF4 A 401
6	AC6	SOFTWARE	CYS A:261 , CYS A:264 , CYS A:278 , LEU A:279 , SER A:317	BINDING SITE FOR RESIDUE SF4 A 402
7	AC7	SOFTWARE	CYS B:24 , CYS B:28 , CYS B:31 , MET B:32 , ASN B:104 , SAM B:501	BINDING SITE FOR RESIDUE SF4 B 401
8	AC8	SOFTWARE	CYS B:261 , CYS B:264 , CYS B:278 , SER B:317	BINDING SITE FOR RESIDUE SF4 B 402

(no "SS Bond" information available for 2FB2)

Asymmetric/Biological Unit

No.	Residues
1	Gly A:74	-	Gly A:75
2	Asp A:202	-	Asn A:203
3	Asp A:245	-	Asn A:246
4	Gly B:74	-	Gly B:75

(no "SAP(SNP)/Variant" information available for 2FB2)

Asymmetric/Biological Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	MOAA_NIFB_PQQE	PS01305	moaA / nifB / pqqE family signature.	MOAA_STAA8	20-31	2	A:20-31 B:20-31

(no "Exon" information available for 2FB2)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:327
 aligned with MOAA_STAA8 | P69848 from UniProtKB/Swiss-Prot  Length:340

    Alignment length:327
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       
           MOAA_STAA8     3 EQIKDKLGRPIRDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMRRDLDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLNVKVNVVIQKGINDDQIIPMLEYFKDKHIEIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQHFEIDPVEPKYFGEVAKYYRHKDNGVQFGLITSVSQSFCSTCTRARLSSDGKFYGCLFATVDGFNVKAFIRSGVTDEELKEQFKALWQIRDDRYSDERTAQTVANRQ 329
               SCOP domains d2fb2a_ A: Molybdenum cofactor biosynthesis protein A MoaA                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eeeee.........................hhhhh.hhhhhhhhhhhhhhh...eeeee..hhhhh.hhhhhhhhhh......eeeeee...hhhhhhhhhhhh...eeeee....hhhhhhhhhh...hhhhhhhhhhhhhhhh.eeeeeeee....hhhhhhhhhhhhhhhh..eeeee................hhhhhhhhhhhhh.eee..........eeeee.....eeeee......hhhhh.eeee.....ee..........hhhhhhhh..hhhhhhhhhhhhhhh...hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------MOAA_NIFB_PQ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2fb2 A   3 EQIKDKLGRPIRDLALSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMRRDLDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLNVKVNVVIQKGINDDQIIPMLEYFKDKHIEIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQHFEIDPVEPKYFGEVAKYYRHKDNGVQFGLITSVSQSFCSTCTAAALSSDGKFYGCLFATVDGFNVKAFIRSGVTDEELKEQFKALWQIRDDRYSDERTAQTVANRQ 329
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322

Chain B from PDB  Type:PROTEIN  Length:326
 aligned with MOAA_STAA8 | P69848 from UniProtKB/Swiss-Prot  Length:340

    Alignment length:326
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323      
           MOAA_STAA8     4 QIKDKLGRPIRDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMRRDLDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLNVKVNVVIQKGINDDQIIPMLEYFKDKHIEIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQHFEIDPVEPKYFGEVAKYYRHKDNGVQFGLITSVSQSFCSTCTRARLSSDGKFYGCLFATVDGFNVKAFIRSGVTDEELKEQFKALWQIRDDRYSDERTAQTVANRQ 329
               SCOP domains d2fb2b_ B: Molybdenum cofactor biosynthesis protein A MoaA                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeee.........................hhhhh.hhhhhhhhhhhhhhh...eeeee..hhhhh.hhhhhhhhhhh.....eeeeee...hhhhhhhhhhhhh..eeeee....hhhhhhhhhh...hhhhhhhhhhhhhhh..eeeeeeee....hhhhhhhhhhhhhhhh.eeeeee................hhhhhhhhhhhhh.eeee.........eeeee.....eeeee......hhhhh.eeee....eee.........eehhhhhh...hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------MOAA_NIFB_PQ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2fb2 B   4 QIKDKLGRPIRDLALSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMRRDLDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLNVKVNVVIQKGINDDQIIPMLEYFKDKHIEIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQHFEIDPVEPKYFGEVAKYYRHKDNGVQFGLITSVSQSFCSTCTAAALSSDGKFYGCLFATVDGFNVKAFIRSGVTDEELKEQFKALWQIRDDRYSDERTAQTVANRQ 329
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: TIM beta/alpha-barrel (3956)

Superfamily: Radical SAM enzymes (6)

Family: MoCo biosynthesis proteins (4)

Protein domain: Molybdenum cofactor biosynthesis protein A MoaA (4)

Staphylococcus aureus [TaxId: 1280] (4)

1a	d2fb2a_	A:
1b	d2fb2b_	B:

(no "CATH Domain" information available for 2FB2)

(no "Pfam Domain" information available for 2FB2)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (MOAA_STAA8 | P69848)

molecular function
	GO:0051539	4 iron, 4 sulfur cluster binding	Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands.
	GO:0005525	GTP binding	Interacting selectively and non-covalently with GTP, guanosine triphosphate.
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0051536	iron-sulfur cluster binding	Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
	GO:0016829	lyase activity	Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0061597	obsolete cyclic pyranopterin monophosphate synthase activity	OBSOLETE Catalysis of the reaction GTP = cyclic pyranopterin phosphate + diphosphate.
biological process
	GO:0006777	Mo-molybdopterin cofactor biosynthetic process	The chemical reactions and pathways resulting in the formation of the Mo-molybdopterin cofactor, essential for the catalytic activity of some enzymes. The cofactor consists of a mononuclear molybdenum (Mo) ion coordinated by one or two molybdopterin ligands.
	GO:0032324	molybdopterin cofactor biosynthetic process	The chemical reactions and pathways resulting in the formation of the molybdopterin cofactor (Moco), essential for the catalytic activity of some enzymes, e.g. sulfite oxidase, xanthine dehydrogenase, and aldehyde oxidase. The cofactor consists of a mononuclear molybdenum (Mo-molybdopterin) or tungsten ion (W-molybdopterin) coordinated by one or two molybdopterin ligands.
cellular component
	GO:0019008	molybdopterin synthase complex	A protein complex that possesses molybdopterin synthase activity. In E. coli, the complex is a heterotetramer consisting of two MoaD and two MoaE subunits.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
		Asp A:202 - Asn A:203	[ RasMol ]
		Asp A:245 - Asn A:246	[ RasMol ]
		Gly A:74 - Gly A:75	[ RasMol ]
		Gly B:74 - Gly B:75	[ RasMol ]

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	2fb2
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	MOAA_STAA8 \| P69848
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	MOAA_STAA8 \| P69848	:	1tv7 1tv8 2fb3

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 8)

Sites (8, 8)

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 2)

Exons (0, 0)

Sequences/Alignments

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SCOP Domains (1, 2)

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Pfam Domains (0, 0)

Gene Ontology (11, 11)

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