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(-) Description

Title :  CRYSTAL STRUCTURE OF CONSERVED PROTEIN OF UNKNOWN FUNCTION FROM BACTEROIDES THETAIOTAOMICRON VPI-5482 AT 2.10 A RESOLUTION, POSSIBLE OXIDOREDUCTASE
 
Authors :  B. Nocek, C. Hatzos, J. Abdullah, F. Collart, A. Joachimiak, Midwest C Structural Genomics (Mcsg)
Date :  08 Dec 05  (Deposition) - 24 Jan 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Conserved Hypothetical Protein, Sad, Bacteroides Thetaiotaomicron, Structural Genomics, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Nocek, C. Hatzos, J. Abdullah, F. Collart, A. Joachimiak
Crystal Structure Of Conserved Hypothetical Protein From Bacteroides Thetaiotaomicron Vpi-5482 At 2. 10 Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CONSERVED HYPOTHETICAL PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET15B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: BACTEROIDES THETAIOTAOMICRON
    Organism Taxid: 226186
    Strain: VPI-5482

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 8)

Asymmetric Unit (3, 8)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2GOL4Ligand/IonGLYCEROL
3MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (3, 16)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2GOL8Ligand/IonGLYCEROL
3MSE6Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:38 , GLU A:54 , HIS A:65 , PHE A:71BINDING SITE FOR RESIDUE ACT A 901
2AC2SOFTWAREALA A:69 , HIS A:70 , HOH A:168BINDING SITE FOR RESIDUE GOL A 801
3AC3SOFTWAREARG A:47 , HOH A:103BINDING SITE FOR RESIDUE GOL A 802
4AC4SOFTWAREARG A:9 , ASN A:11 , ARG A:46 , ASP A:48BINDING SITE FOR RESIDUE GOL A 803
5AC5SOFTWAREGLU A:87 , LYS A:88 , PHE A:89 , PHE A:91 , HOH A:174BINDING SITE FOR RESIDUE GOL A 804

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2FB0)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Ala A:-2 -Asn A:-1

 Sequence-Structure Mapping

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:94
 aligned with Q8A7U6_BACTN | Q8A7U6 from UniProtKB/TrEMBL  Length:91

    Alignment length:94
                               1                                                                                          
                               |     7        17        27        37        47        57        67        77        87    
          Q8A7U6_BACTN    - ---MIRLNVFVRVNETNREKAIEAAKELTACSLKEEGCIAYDTFESSTRRDVFMICETWQNAEVLAAHEKTAHFAQYVGIIQELAEMKLEKFEF 91
               SCOP domains ---------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2fb0A00 A:-2-91  [code=3.30.70.900, no name defined]                                           CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeee....hhhhhhhhhhhhhhhhh....eeeeeeee......eeeeeeee.hhhhhhhhh.hhhhhhhhhhhhhhheeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                  2fb0 A -2 ANSmIRLNVFVRVNETNREKAIEAAKELTACSLKEEGCIAYDTFESSTRRDVFmICETWQNAEVLAAHEKTAHFAQYVGIIQELAEmKLEKFEF 91
                               |     7        17        27        37        47   |    57        67        77      | 87    
                               |                                                51-MSE                           84-MSE   
                               1-MSE
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2FB0)

(-) CATH Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2FB0)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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(-) Related Entries Specified in the PDB File

1x7v CRYSTAL STRUCTURE OF PA3566 FROM PSEUDOMONAS AERUGINOSA RELATED ID: APC81531 RELATED DB: TARGETDB