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Title :   CRYSTAL STRUCTURE OF THE PUTATIVE SELENOPROTEIN W-RELATED FAMILY PROTEIN FROM AGROBACTERIUM TUMEFACIENS

Authors :   Y. Kim, A. Joachimiak, X. Xu, H. Zheng, A. Savchenko, A. Edwards, Midwes For Structural Genomics (Mcsg)

Date :   07 Dec 05 (Deposition) - 24 Jan 06 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym./Biol. Unit : A,B,C,D

Keywords :   Alph-Beta Structure, 4 Helix Bundle, Structural Genomics, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Y. Kim, X. Xu, H. Zheng, A. Savchenko, A. Edwards, A. Joachimiak
Crystal Structure Of The Putative Selenoprotein W-Related Family Protein From Agrobacterium Tumefaciens
To Be Published 2006
PubMed: search

Molecule 1 - HYPOTHETICAL PROTEIN ATU0228
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PMCSG7
	Expression System Strain	:	BL21DE3
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	ATU0228
	Organism Scientific	:	AGROBACTERIUM TUMEFACIENS STR.
	Organism Taxid	:	176299
	Strain	:	C58

		1	2	3	4
Asymmetric/Biological Unit	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (1, 4)

No.	Name	Count	Type	Full Name
1	MSE	4	Mod. Amino Acid	SELENOMETHIONINE

(no "Site" information available for 2FA8)

Asymmetric/Biological Unit

No.	Residues
1	A:13	-	A:16
2	B:13	-	B:16
3	C:13	-	C:16
4	D:13	-	D:16

(no "Cis Peptide Bond" information available for 2FA8)

(no "SAP(SNP)/Variant" information available for 2FA8)

(no "PROSITE Motif" information available for 2FA8)

(no "Exon" information available for 2FA8)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:86
 aligned with A9CKJ2_AGRFC | A9CKJ2 from UniProtKB/TrEMBL  Length:101

    Alignment length:86
                                    13        23        33        43        53        63        73        83      
          A9CKJ2_AGRFC    4 TKPRIAIRYCTQCNWLLRAGWMAQEILQTFASDIGEVSLIPSTGGLFEITVDGTIIWERKRDGGFPGPKELKQRIRDLIDPERDLG 89
               SCOP domains d2fa8a1 A:4-89 Hypothetical protein Atu0228                                            SCOP domains
               CATH domains 2fa8A00 A:4-89 Glutaredoxin                                                            CATH domains
               Pfam domains -------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee....hhhhhhhhhhhhhhhhhhhh.eeeeeee....eeeee..eeeeehhhhh...hhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------- Transcript
                  2fa8 A  4 TKPRIAIRYCTQCNWLLRAGWmAQEILQTFASDIGEVSLIPSTGGLFEITVDGTIIWERKRDGGFPGPKELKQRIRDLIDPERDLG 89
                                    13        23 |      33        43        53        63        73        83      
                                                25-MSE

Chain B from PDB  Type:PROTEIN  Length:87
 aligned with A9CKJ2_AGRFC | A9CKJ2 from UniProtKB/TrEMBL  Length:101

    Alignment length:87
                                    13        23        33        43        53        63        73        83       
          A9CKJ2_AGRFC    4 TKPRIAIRYCTQCNWLLRAGWMAQEILQTFASDIGEVSLIPSTGGLFEITVDGTIIWERKRDGGFPGPKELKQRIRDLIDPERDLGH 90
               SCOP domains d2fa8b_ B: Hypothetical protein Atu0228                                                 SCOP domains
               CATH domains 2fa8B00 B:4-90 Glutaredoxin                                                             CATH domains
               Pfam domains --------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee....hhhhhhhhhhhhhhhh.....eeeeeee....eeeee..eeeeehhhhh...hhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------- Transcript
                  2fa8 B  4 TKPRIAIRYCTQCNWLLRAGWmAQEILQTFASDIGEVSLIPSTGGLFEITVDGTIIWERKRDGGFPGPKELKQRIRDLIDPERDLGH 90
                                    13        23 |      33        43        53        63        73        83       
                                                25-MSE

Chain C from PDB  Type:PROTEIN  Length:81
 aligned with A9CKJ2_AGRFC | A9CKJ2 from UniProtKB/TrEMBL  Length:101

    Alignment length:81
                                    12        22        32        42        52        62        72        82 
          A9CKJ2_AGRFC    3 ETKPRIAIRYCTQCNWLLRAGWMAQEILQTFASDIGEVSLIPSTGGLFEITVDGTIIWERKRDGGFPGPKELKQRIRDLID 83
               SCOP domains d2fa8c_ C: Hypothetical protein Atu0228                                           SCOP domains
               CATH domains 2fa8C00 C:3-83 Glutaredoxin                                                       CATH domains
               Pfam domains --------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee....hhhhhhhhhhhhhhhhhhhh.eeeeeee....eeeee..eeeeehhhhh...hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------- Transcript
                  2fa8 C  3 ETKPRIAIRYCTQCNWLLRAGWmAQEILQTFASDIGEVSLIPSTGGLFEITVDGTIIWERKRDGGFPGPKELKQRIRDLID 83
                                    12        22  |     32        42        52        62        72        82 
                                                 25-MSE

Chain D from PDB  Type:PROTEIN  Length:81
 aligned with A9CKJ2_AGRFC | A9CKJ2 from UniProtKB/TrEMBL  Length:101

    Alignment length:81
                                    11        21        31        41        51        61        71        81 
          A9CKJ2_AGRFC    2 TETKPRIAIRYCTQCNWLLRAGWMAQEILQTFASDIGEVSLIPSTGGLFEITVDGTIIWERKRDGGFPGPKELKQRIRDLI 82
               SCOP domains d2fa8d_ D: Hypothetical protein Atu0228                                           SCOP domains
               CATH domains 2fa8D00 D:2-82 Glutaredoxin                                                       CATH domains
               Pfam domains --------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeee.hhhhhhhhhhhhhhhhhhhhhhh.eeeeeee....eeeee..eeeeehhhhh...hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------- Transcript
                  2fa8 D  2 TETKPRIAIRYCTQCNWLLRAGWmAQEILQTFASDIGEVSLIPSTGGLFEITVDGTIIWERKRDGGFPGPKELKQRIRDLI 82
                                    11        21   |    31        41        51        61        71        81 
                                                  25-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: Thioredoxin fold (994)

Superfamily: Thioredoxin-like (992)

Family: Selenoprotein W-related (7)

Protein domain: Hypothetical protein Atu0228 (1)

Agrobacterium tumefaciens [TaxId: 358] (1)

1a	d2fa8a1	A:4-89
1b	d2fa8b_	B:
1c	d2fa8c_	C:
1d	d2fa8d_	D:

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Glutaredoxin (620)

Homologous Superfamily: Glutaredoxin (617)

C58 (Agrobacterium tumefaciens str) (1)

1a	2fa8B00	B:4-90
1b	2fa8A00	A:4-89
1c	2fa8C00	C:3-83
1d	2fa8D00	D:2-82

(no "Pfam Domain" information available for 2FA8)

Asymmetric/Biological Unit(hide GO term definitions)

(no "Gene Ontology" information available for 2FA8)

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