2F8F - JenaLib

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Title :   CRYSTAL STRUCTURE OF THE Y10F MUTANT OF THE GLUATHIONE S-TRANSFERASE FROM SCHISTOSOMA HAEMATOBIUM

Authors :   L. J. Gourlay, P. Baiocco, F. Angelucci, A. E. Miele, A. Bellelli, M. Bru

Date :   02 Dec 05 (Deposition) - 04 Jul 06 (Release) - 21 Mar 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.10

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: A (1x),B (1x)

Keywords :   Thioredoxin Fold, Homodimer, Protein_gtt Complex, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   P. Baiocco, L. J. Gourlay, F. Angelucci, J. Fontaine, M. Herve, A. E. Miele, F. Trottein, M. Brunori, A. Bellelli
Probing The Mechanism Of Gsh Activation In Schistosoma Haematobium Glutathione-S-Transferase By Site-Directed Mutagenesis And X-Ray Crystallography.
J. Mol. Biol. V. 360 678 2006
PubMed-ID: 16777141 | Reference-DOI: 10.1016/J.JMB.2006.05.040

Molecule 1 - GLUTATHIONE S-TRANSFERASE 28 KDA
	Chains	:	A, B
	EC Number	:	2.5.1.18
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21/PLYS
	Expression System Taxid	:	562
	Expression System Vector	:	PET-23D
	Expression System Vector Type	:	PLASMID
	Mutation	:	YES
	Organism Scientific	:	SCHISTOSOMA HAEMATOBIUM
	Organism Taxid	:	6185
	Synonym	:	GST 28, GST CLASS- MU

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:	A (1x)	B (1x)

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 2)

No.	Name	Count	Type	Full Name
1	GSH	2	Ligand/Ion	GLUTATHIONE

Biological Unit 1 (1, 2)

No.	Name	Count	Type	Full Name
1	GSH	2	Ligand/Ion	GLUTATHIONE

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	GSH	1	Ligand/Ion	GLUTATHIONE

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	PHE A:11 , ARG A:16 , TRP A:41 , LYS A:45 , GLY A:51 , ARG A:52 , LEU A:53 , GLU A:70 , SER A:71 , HOH A:255 , ASP B:104	BINDING SITE FOR RESIDUE GSH A 212
2	AC2	SOFTWARE	ASP A:104 , PHE B:11 , ARG B:16 , TRP B:41 , LYS B:45 , ARG B:52 , LEU B:53 , GLU B:70 , SER B:71 , HOH B:330	BINDING SITE FOR RESIDUE GSH B 301

(no "SS Bond" information available for 2F8F)

Asymmetric Unit

No.	Residues
1	Leu A:53	-	Pro A:54
2	Leu B:53	-	Pro B:54

(no "SAP(SNP)/Variant" information available for 2F8F)

Asymmetric Unit (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GST_NTER	PS50404	Soluble glutathione S-transferase N-terminal domain profile.	GST28_SCHBO	4-86	2	A:4-86 B:4-86
2	GST_CTER	PS50405	Soluble glutathione S-transferase C-terminal domain profile.	GST28_SCHBO	88-211	2	A:88-206 B:88-205

Biological Unit 1 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GST_NTER	PS50404	Soluble glutathione S-transferase N-terminal domain profile.	GST28_SCHBO	4-86	2	A:4-86 B:4-86
2	GST_CTER	PS50405	Soluble glutathione S-transferase C-terminal domain profile.	GST28_SCHBO	88-211	2	A:88-206 B:88-205

Biological Unit 2 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GST_NTER	PS50404	Soluble glutathione S-transferase N-terminal domain profile.	GST28_SCHBO	4-86	2	A:4-86 B:4-86
2	GST_CTER	PS50405	Soluble glutathione S-transferase C-terminal domain profile.	GST28_SCHBO	88-211	2	A:88-206 B:88-205

(no "Exon" information available for 2F8F)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:203
 aligned with GST28_SCHBO | P30113 from UniProtKB/Swiss-Prot  Length:211

    Alignment length:203
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203   
          GST28_SCHBO     4 DHIKVIYFNGRGRAESIRMTLVAAGVNYEDERISFQDWPKIKPTIPGGRLPAVKITDNHGHVKWMVESLAIARYMAKKHHMMGGTEEEYYNVEKLIGQAEDLEHEYYKTLMKPEEEKQKIIKEILNGKVPVLLDIICESLKASTGKLAVGDKVTLADLVLIAVIDHVTDLDKEFLTGKYPEIHKHRENLLASSPRLAKYLSDR 206
               SCOP domains d2f8fa2 A:4-84 automated matches                                                 d2f8fa1 A:85-206 automated matches                                                                                         SCOP domains
               CATH domains 2f8fA01 A:4-83 Glutaredoxin                                                     2f8fA02 A:84-206  [code=1.20.1050.10, no name defined]                                                                      CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee......hhhhhhhhhhhh...eeee....hhhhhhhhh......eeeee.....eeeeehhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE GST_NTER  PDB: A:4-86 UniProt: 4-86                                                -GST_CTER  PDB: A:88-206 UniProt: 88-211                                                                                 PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2f8f A   4 DHIKVIFFNGRGRAESIRMTLVAAGVNYEDERISFQDWPKIKPTIPGGRLPAVKITDNHGHVKWMVESLAIARYMAKKHHMMGGTEEEYYNVEKLIGQAEDLEHEYYKTLMKPEEEKQKIIKEILNGKVPVLLDIICESLKASTGKLAVGDKVTLADLVLIAVIDHVTDLDKEFLTGKYPEIHKHRENLLASSPRLAKYLSDR 206
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203

Chain B from PDB  Type:PROTEIN  Length:203
 aligned with GST28_SCHBO | P30113 from UniProtKB/Swiss-Prot  Length:211

    Alignment length:203
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202   
          GST28_SCHBO     3 GDHIKVIYFNGRGRAESIRMTLVAAGVNYEDERISFQDWPKIKPTIPGGRLPAVKITDNHGHVKWMVESLAIARYMAKKHHMMGGTEEEYYNVEKLIGQAEDLEHEYYKTLMKPEEEKQKIIKEILNGKVPVLLDIICESLKASTGKLAVGDKVTLADLVLIAVIDHVTDLDKEFLTGKYPEIHKHRENLLASSPRLAKYLSD 205
               SCOP domains d2f8fb2 B:3-84 automated matches                                                  d2f8fb1 B:85-205 automated matches                                                                                        SCOP domains
               CATH domains 2f8fB01 B:3-83 Glutaredoxin                                                      2f8fB02 B:84-205  [code=1.20.1050.10, no name defined]                                                                     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee......hhhhhhhhhhhh...eeee.hhhhhhhhhhhh......eeeee.....eeeeehhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -GST_NTER  PDB: B:4-86 UniProt: 4-86                                                -GST_CTER  PDB: B:88-205 UniProt: 88-211                                                                                PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2f8f B   3 GDHIKVIFFNGRGRAESIRMTLVAAGVNYEDERISFQDWPKIKPTIPGGRLPAVKITDNHGHVKWMVESLAIARYMAKKHHMMGGTEEEYYNVEKLIGQAEDLEHEYYKTLMKPEEEKQKIIKEILNGKVPVLLDIICESLKASTGKLAVGDKVTLADLVLIAVIDHVTDLDKEFLTGKYPEIHKHRENLLASSPRLAKYLSD 205
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Glutaredoxin (620)

Homologous Superfamily: Glutaredoxin (617)

Schistosoma haematobium. Organism_taxid: 6185. (2)

1a	2f8fB01	B:3-83
1b	2f8fA01	A:4-83

Class: Mainly Alpha (13335)

Architecture: Up-down Bundle (3216)

Topology: Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 (267)

Homologous Superfamily: [code=1.20.1050.10, no name defined] (249)

Schistosoma haematobium. Organism_taxid: 6185. (2)

2a	2f8fB02	B:84-205
2b	2f8fA02	A:84-206

(no "Pfam Domain" information available for 2F8F)

Asymmetric Unit(hide GO term definitions)

Chain A,B (GST28_SCHBO | P30113)

molecular function
	GO:0004364		glutathione transferase activity		Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group.
	GO:0016740		transferase activity		Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.

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