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(-) Description

Title :  STRUCTURE OF CELL FILAMENTATION PROTEIN (FIC) FROM HELICOBACTER PYLORI
 
Authors :  M. E. Cuff, X. Xu, H. Zheng, A. Edwards, A. Savchenko, A. Joachimiak, Mid Center For Structural Genomics (Mcsg)
Date :  29 Nov 05  (Deposition) - 10 Jan 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Cell Filamentation Protein; Helicobacter Pylori, Structural Genomics, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. E. Cuff, X. Xu, H. Zheng, A. Edwards, A. Savchenko, A. Joachimiak
Structure Of Cell Filamentation Protein (Fic) From Helicobacter Pylori
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CELL FILAMENTATION PROTEIN, PUTATIVE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: FIC
    Organism Scientific: HELICOBACTER PYLORI
    Organism Taxid: 85962
    Strain: 26695

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 12)

Asymmetric/Biological Unit (3, 12)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE
2PO42Ligand/IonPHOSPHATE ION
3ZN2Ligand/IonZINC ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:0 , HIS A:2 , HIS B:96 , PO4 B:1001BINDING SITE FOR RESIDUE ZN A 1101
2AC2SOFTWAREHIS A:96 , GLU A:100 , GLY A:101 , ASN A:102 , GLY A:103 , HOH A:5002 , HOH A:5034 , HOH A:5059 , HOH A:5080 , HIS B:0 , HIS B:2 , ZN B:5501BINDING SITE FOR RESIDUE PO4 A 5001
3AC3SOFTWAREHIS A:96 , PO4 A:5001 , HIS B:0 , HIS B:2BINDING SITE FOR RESIDUE ZN B 5501
4AC4SOFTWAREHIS A:0 , HIS A:2 , ZN A:1101 , HIS B:96 , GLU B:100 , GLY B:101 , ASN B:102 , GLY B:103 , HOH B:5504 , HOH B:5508 , HOH B:5533BINDING SITE FOR RESIDUE PO4 B 1001

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2F6S)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2F6S)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2F6S)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2F6S)

(-) Exons   (0, 0)

(no "Exon" information available for 2F6S)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:180
 aligned with O25774_HELPY | O25774 from UniProtKB/TrEMBL  Length:177

    Alignment length:180
                              1                                                                                                                                                                             177 
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168        |-
         O25774_HELPY     - --MHLDRQSLEKAKHLIQSGLIDTIEVGTIKGLQEIHRFLFEGLYEFAGKIRDKNIAKGNFRFANCLYLDLILPRIESMPQNNFNQIVEKYVEMNIAHPFLEGNGRATRIWLDLLLKKELKKIVLWDRIDKAAYLSAMERSPVNDLEIKTLLKKHLSSNTNDPLTLIKGITQSYYYEGL-   -
               SCOP domains --d2f6sa1 A:1-177 Cell filamentation protein Fic                                                                                                                                   - SCOP domains
               CATH domains 2f6sA00 A:-1-178 Fic-like domain                                                                                                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh..............ee..ee.....hhhhhhhhhhh....hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh.ee.hhhhhhhhhhhhhhhh...hhhhhhhhhh.ee....hhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2f6s A  -1 GHmHLDRQSLEKAKHLIQSGLIDTIEVGTIKGLQEIHRFLFEGLYEFAGKIRDKNIAKGNFRFANCLYLDLILPRIESmPQNNFNQIVEKYVEmNIAHPFLEGNGRATRIWLDLLLKKELKKIVLWDRIDKAAYLSAmERSPVNDLEIKTLLKKHLSSNTNDPLTLIKGITQSYYYEGLG 178
                              |      8        18        28        38        48        58        68        78        88   |    98       108       118       128       138       148       158       168       178
                              |                                                                          77-MSE         92-MSE                                     136-MSE                                      
                              1-MSE                                                                                                                                                                             


Chain B from PDB  Type:PROTEIN  Length:180
 aligned with O25774_HELPY | O25774 from UniProtKB/TrEMBL  Length:177

    Alignment length:180
                              1                                                                                                                                                                             177 
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168        |-
         O25774_HELPY     - --MHLDRQSLEKAKHLIQSGLIDTIEVGTIKGLQEIHRFLFEGLYEFAGKIRDKNIAKGNFRFANCLYLDLILPRIESMPQNNFNQIVEKYVEMNIAHPFLEGNGRATRIWLDLLLKKELKKIVLWDRIDKAAYLSAMERSPVNDLEIKTLLKKHLSSNTNDPLTLIKGITQSYYYEGL-   -
               SCOP domains d2f6sb_ B: Cell filamentation protein Fic                                                                                                                                            SCOP domains
               CATH domains 2f6sB00 B:-1-178 Fic-like domain                                                                                                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh..............ee..ee..hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh.ee.hhhhhhhhhhhhhhhh...hhhhhhhhhh.ee....hhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2f6s B  -1 GHmHLDRQSLEKAKHLIQSGLIDTIEVGTIKGLQEIHRFLFEGLYEFAGKIRDKNIAKGNFRFANCLYLDLILPRIESmPQNNFNQIVEKYVEmNIAHPFLEGNGRATRIWLDLLLKKELKKIVLWDRIDKAAYLSAmERSPVNDLEIKTLLKKHLSSNTNDPLTLIKGITQSYYYEGLG 178
                              |      8        18        28        38        48        58        68        78        88   |    98       108       118       128       138       148       158       168       178
                              1-MSE                                                                      77-MSE         92-MSE                                     136-MSE
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2F6S)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2F6S)

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 Related Entries

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