2F46 - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF A PUTATIVE PHOSPHATASE (NMA1982) FROM NEISSERIA MENINGITIDIS Z2491 AT 1.41 A RESOLUTION

Authors :   Joint Center For Structural Genomics (Jcsg)

Date :   22 Nov 05 (Deposition) - 07 Feb 06 (Release) - 23 Mar 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.41

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. S. Krishna, L. Tautz, Q. Xu, D. Mcmullan, M. D. Miller, P. Abdubek, E. Ambing, T. Astakhova, H. L. Axelrod, D. Carlton, H. J. Chiu, T. Clayton, M. Didonato, L. Duan, M. A. Elsliger, S. K. Grzechnik, J. Hale, E. Hampton, G. W. Han, J. Haugen, L. Jaroszewski, K. K. Jin, H. E. Klock, M. W. Knuth, E. Koesema, A. T. Morse, T. Mustelin, E. Nigoghossian, S. Oommachen, R. Reyes, C. L. Rife, H. Van Den Bedem D. Weekes, A. White, K. O. Hodgson, J. Wooley, A. M. Deacon, A. Godzik, S. A. Lesley, I. A. Wilson
Crystal Structure Of Nma1982 From Neisseria Meningitidis At 1. 5 A Resolution Provides A Structural Scaffold For Nonclassical, Eukaryotic-Like Phosphatases.
Proteins V. 69 415 2007
PubMed-ID: 17636569 | Reference-DOI: 10.1002/PROT.21314

Molecule 1 - HYPOTHETICAL PROTEIN
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	7380613
	Organism Scientific	:	NEISSERIA MENINGITIDIS Z2491
	Organism Taxid	:	122587
	Strain	:	FAM18

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 7)

No.	Name	Count	Type	Full Name
1	CL	2	Ligand/Ion	CHLORIDE ION
2	MSE	4	Mod. Amino Acid	SELENOMETHIONINE
3	UNL	1	Ligand/Ion	UNKNOWN LIGAND

Biological Unit 1 (1, 2)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	MSE	2	Mod. Amino Acid	SELENOMETHIONINE
3	UNL	-1	Ligand/Ion	UNKNOWN LIGAND

Biological Unit 2 (2, 3)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	MSE	2	Mod. Amino Acid	SELENOMETHIONINE
3	UNL	1	Ligand/Ion	UNKNOWN LIGAND

Asymmetric Unit (3, 3)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	PRO B:50 , ASP B:51 , HIS B:77	BINDING SITE FOR RESIDUE CL B 156
2	AC2	SOFTWARE	PRO A:50 , ASP A:51 , HIS A:77	BINDING SITE FOR RESIDUE CL A 156
3	AC3	SOFTWARE	ASP B:84 , GLN B:86 , HIS B:88 , ASP B:89 , HOH B:238 , HOH B:265 , HOH B:316	BINDING SITE FOR RESIDUE UNL B 157

(no "SS Bond" information available for 2F46)

Asymmetric Unit

No.	Residues
1	Tyr A:102	-	Pro A:103
2	Tyr B:102	-	Pro B:103

(no "SAP(SNP)/Variant" information available for 2F46)

(no "PROSITE Motif" information available for 2F46)

(no "Exon" information available for 2F46)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:143
 aligned with A1KVD0_NEIMF | A1KVD0 from UniProtKB/TrEMBL  Length:155

    Alignment length:143
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152   
         A1KVD0_NEIMF    13 KMAILKLDEHLYISPQLTKADAEQIAQLGIKTVICNRPDREEESQPDFAQIKQWLEQAGVTGFHHQPVTARDIQKHDVETFRQLIGQAEYPVLAYCRTGTRCSLLWGFRRAAEGMPVDEIIRRAQAAGVNLENFRERLDNARV 155
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2f46A00 A:13-155 Protein tyrosine phosphatase superfamily                                                                                       CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee..eeee...hhhhhhhhhhhh..eeee...........hhhhhhhhhhhhh..eeee........hhhhhhhhhhhhhh....eeee...hhhhhhhhhhhhhhh..hhhhhhhhhhhh...hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2f46 A  13 KmAILKLDEHLYISPQLTKADAEQIAQLGIKTIICNRPDREEESQPDFAQIKQWLEQAGVTGFHHQPVTARDIQKHDVETFRQLIGQAEYPVLAYCRTGTRCSLLWGFRRAAEGmPVDEIIRRAQAAGVNLENFRERLDNARV 155
                             |      22        32        42        52        62        72        82        92       102       112       122    |  132       142       152   
                             |                                                                                                              127-MSE                        
                            14-MSE

Chain B from PDB  Type:PROTEIN  Length:143
 aligned with A1KVD0_NEIMF | A1KVD0 from UniProtKB/TrEMBL  Length:155

    Alignment length:143
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152   
         A1KVD0_NEIMF    13 KMAILKLDEHLYISPQLTKADAEQIAQLGIKTVICNRPDREEESQPDFAQIKQWLEQAGVTGFHHQPVTARDIQKHDVETFRQLIGQAEYPVLAYCRTGTRCSLLWGFRRAAEGMPVDEIIRRAQAAGVNLENFRERLDNARV 155
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2f46B00 B:13-155 Protein tyrosine phosphatase superfamily                                                                                       CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee..eeee...hhhhhhhhhhhh..eeee...........hhhhhhhhhhhhh..eeee........hhhhhhhhhhhhhh....eeee...hhhhhhhhhhhhhhhh.hhhhhhhhhhhh...hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2f46 B  13 KmAILKLDEHLYISPQLTKADAEQIAQLGIKTIICNRPDREEESQPDFAQIKQWLEQAGVTGFHHQPVTARDIQKHDVETFRQLIGQAEYPVLAYCRTGTRCSLLWGFRRAAEGmPVDEIIRRAQAAGVNLENFRERLDNARV 155
                             |      22        32        42        52        62        72        82        92       102       112       122    |  132       142       152   
                            14-MSE                                                                                                          127-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 2F46)

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: Alpha-Beta Complex (3881)

Topology: Protein-Tyrosine Phosphatase; Chain A (262)

Homologous Superfamily: Protein tyrosine phosphatase superfamily (228)

Neisseria meningitidis z2491. Organism_taxid: 122587. Strain: fam18. (1)

1a	2f46A00	A:13-155
1b	2f46B00	B:13-155

(no "Pfam Domain" information available for 2F46)

Asymmetric Unit(hide GO term definitions)

Chain A,B (A1KVD0_NEIMF | A1KVD0)

molecular function
	GO:0016787		hydrolase activity		Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.

Asymmetric Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		CL	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		MSE	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		UNL	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Tyr A:102 - Pro A:103	[ RasMol ]
		Tyr B:102 - Pro B:103	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format \| Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	2f46
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	A1KVD0_NEIMF \| A1KVD0
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/TrEMBL

Access by Enzyme Classificator (EC Number)
	(no 'Enzyme Classificator' available)
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	A1KVD0_NEIMF \| A1KVD0
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

(no "Entries Sharing at Least One Protein Chain" available for 2F46)

(no "Related Entries Specified in the PDB File" available for 2F46)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 7)

Sites (3, 3)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (1, 2)

Pfam Domains (0, 0)

Gene Ontology (1, 1)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File