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(-) Description

Title :  CRYSTAL STRUCTURE OF PROTEIN BT0572 FROM BACTEROIDES THETAIOTAOMICRON
 
Authors :  C. Chang, L. Volkart, F. Collart, A. Joachimiak, Midwest Center For Structural Genomics (Mcsg)
Date :  11 Nov 05  (Deposition) - 27 Dec 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Keywords :  Structural Genomics Hypothetical Protein, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Chang, L. Volkart, F. Collart, A. Joachimiak
Crystal Structure Of Protein Bt0572 From Bacteroides Thetaiotaomicron
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CONSERVED HYPOTHETICAL PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG
    Expression System Strain: BL21(DE3) DERIVATIVE
    Expression System Taxid: 562
    Organism Scientific: BACTEROIDES THETAIOTAOMICRON
    Organism Taxid: 226186
    Strain: VPI-5482

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric Unit (2, 8)
No.NameCountTypeFull Name
1HIS2Mod. Amino AcidHISTIDINE
2MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (2, 16)
No.NameCountTypeFull Name
1HIS4Mod. Amino AcidHISTIDINE
2MSE12Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN B:30 , LEU B:31 , ASN B:78 , VAL B:79 , ALA B:82 , LEU B:83 , SER B:102 , ALA B:104 , ALA B:109 , HOH B:156 , HOH B:169 , HOH B:170BINDING SITE FOR RESIDUE HIS B 151
2AC2SOFTWAREASN A:30 , LEU A:31 , PRO A:77 , ASN A:78 , VAL A:79 , ALA A:82 , LEU A:83 , SER A:102 , ALA A:109 , HOH A:156 , HOH A:157 , HOH A:158BINDING SITE FOR RESIDUE HIS A 152

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:35 -A:35
2B:35 -B:35

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2F06)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2F06)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2F06)

(-) Exons   (0, 0)

(no "Exon" information available for 2F06)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:145
 aligned with Q8AA93_BACTN | Q8AA93 from UniProtKB/TrEMBL  Length:141

    Alignment length:145
                               1                                                                                                                                         141 
                               |     7        17        27        37        47        57        67        77        87        97       107       117       127       137   | 
         Q8AA93_BACTN     - ---MVAKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVSDPDKAYKALKDNHFAVNITDVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSNMDKCIEVLKEKKVDLLAASDLYKL-   -
               SCOP domains ---d2f06a2 A:1-70 Hypothetical protein BT0572                            d2f06a1 A:71-141 Hypothetical protein BT0572                           - SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeee....hhhhhhhhhhhhh...eeeeeeee....eeeeeee.hhhhhhhhhhhh...eeeeeeeeeeee...hhhhhhhhhhhhh...eeeeeeeee..eeeeeeee.hhhhhhhhhhhh..eeehhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2f06 A  -2 SNAmVAKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVSDPDKAYKALKDNHFAVNITDVVGISCPNVPGALAKVLGFLSAEGVFIEYmYSFANNNVANVVIRPSNmDKCIEVLKEKKVDLLAASDLYKLH 152
                               |     7        17        27        37        47        57        67        77        87        97  |    107       117|      127       137   ||
                               |                                                                                                100-MSE           118-MSE                141|
                               1-MSE                                                                                                                                      152


Chain B from PDB  Type:PROTEIN  Length:145
 aligned with Q8AA93_BACTN | Q8AA93 from UniProtKB/TrEMBL  Length:141

    Alignment length:145
                               1                                                                                                                                         141 
                               |     7        17        27        37        47        57        67        77        87        97       107       117       127       137   | 
         Q8AA93_BACTN     - ---MVAKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVSDPDKAYKALKDNHFAVNITDVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSNMDKCIEVLKEKKVDLLAASDLYKL-   -
               SCOP domains d2f06b2 B:-2-70 Hypothetical protein BT0572                              d2f06b1 B:71-141 Hypothetical protein BT0572                           - SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeee....hhhhhhhhhhhhh...eeeeeeee....eeeeeee.hhhhhhhhhhhh...eeeeeeeeeeee...hhhhhhhhhhhhh...eeeeeeeee..eeeeeeee.hhhhhhhhhhhh..ee.hhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2f06 B  -2 SNAmVAKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVSDPDKAYKALKDNHFAVNITDVVGISCPNVPGALAKVLGFLSAEGVFIEYmYSFANNNVANVVIRPSNmDKCIEVLKEKKVDLLAASDLYKLH 151
                               |     7        17        27        37        47        57        67        77        87        97  |    107       117|      127       137   ||
                               |                                                                                                100-MSE           118-MSE                141|
                               1-MSE                                                                                                                                      151
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2F06)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2F06)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (Q8AA93_BACTN | Q8AA93)
molecular function
    GO:0016597    amino acid binding    Interacting selectively and non-covalently with an amino acid, organic acids containing one or more amino substituents.
biological process
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

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