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(-) Description

Title :  X-RAY CRYSTAL STRUCTURE OF PROTEIN PSPTO5229 FROM PSEUDOMONAS SYRINGAE. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET PSR62
 
Authors :  F. Forouhar, W. Zhou, A. Belachew, S. Jayaraman, M. Ciao, R. Xiao, T. B. A G. T. Montelione, J. F. Hunt, L. Tong, Northeast Structural Genomic Consortium (Nesg)
Date :  31 Oct 05  (Deposition) - 08 Nov 05  (Release) - 09 Jun 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym./Biol. Unit :  A
Keywords :  Alpha-Beta Protein, Structural Genomics, Psi, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Bertonati, M. Punta, M. Fischer, G. Yachdav, F. Forouhar, W. Zhou, A. P. Kuzin, J. Seetharaman, M. Abashidze, T. A. Ramelot, M. A. Kennedy, J. R. Cort, A. Belachew, J. F. Hunt, L. Tong, G. T. Montelione, B. Rost
Structural Genomics Reveals Eve As A New Asch/Pua-Related Domain.
Proteins V. 75 760 2009
PubMed-ID: 19191354  |  Reference-DOI: 10.1002/PROT.22287

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN PSPTO5229
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21+MAGIC
    Expression System Strain: XL-GOLD
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: 1186914
    Organism Scientific: PSEUDOMONAS SYRINGAE PV. TOMATO STR. DC3000
    Organism Taxid: 223283
    Strain: DC3000.

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 6)

Asymmetric/Biological Unit (4, 6)
No.NameCountTypeFull Name
11441Ligand/IonTRIS-HYDROXYMETHYL-METHYL-AMMONIUM
2EDO1Ligand/Ion1,2-ETHANEDIOL
3MPO1Ligand/Ion3[N-MORPHOLINO]PROPANE SULFONIC ACID
4MSE3Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:7 , GLU A:12 , TRP A:26 , ASP A:27 , GLY A:28 , TYR A:82 , SER A:133 , HOH A:311 , HOH A:315 , HOH A:327 , HOH A:344 , HOH A:380 , HOH A:449BINDING SITE FOR RESIDUE MPO A 301
2AC2SOFTWAREARG A:20 , ARG A:131 , HOH A:434 , HOH A:503 , HOH A:519 , HOH A:521BINDING SITE FOR RESIDUE EDO A 302
3AC3SOFTWARELYS A:7 , ARG A:25 , TYR A:50 , SER A:52 , SER A:53 , LEU A:111 , HOH A:449BINDING SITE FOR RESIDUE 144 A 303

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2EVE)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2EVE)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2EVE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2EVE)

(-) Exons   (0, 0)

(no "Exon" information available for 2EVE)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:149
 aligned with Q87UR7_PSESM | Q87UR7 from UniProtKB/TrEMBL  Length:149

    Alignment length:149
                                                                                                                                                                             149 
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       | 
         Q87UR7_PSESM     2 AYWLMKSEPDEFSISDLQRLGKARWDGVRNYQARNFLRTMAEGDEFFFYHSSCPEPGIAGIGKIVKTAYPDPTALDPDSHYHDAKATTEKNPWSALDIGFVDIFKNVLGLGYLKQQSQLEQLPLVQKGSRLSVMPVTAEQWAAILALR-   -
               SCOP domains d2evea1 A:2-149 Hypothetical protein PSPTO5229                                                                                                      - SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.....hhhhhhhhheeee....hhhhhhhhhhh....eeeeee......eeeeeeeeeeeeee.hhhhh.................eeeeeeeeeeeeeeeehhhhhhhhhhh.hhhhh......eeeehhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2eve A   2 AYWLmKSEPDEFSISDLQRLGKARWDGVRNYQARNFLRTmAEGDEFFFYHSSCPEPGIAGIGKIVKTAYPDPTALDPDSHYHDAKATTEKNPWSALDIGFVDIFKNVLGLGYLKQQSQLEQLPLVQKGSRLSVmPVTAEQWAAILALRL 150
                                |   11        21        31        41        51        61        71        81        91       101       111       121       131   |   141         
                                |                                 41-MSE                                                                                       135-MSE           
                                6-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2EVE)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2EVE)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q87UR7_PSESM | Q87UR7)
molecular function
    GO:0003674    molecular_function    Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.
biological process
    GO:0008150    biological_process    Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
cellular component
    GO:0005575    cellular_component    The part of a cell, extracellular environment or virus in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.

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