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(-) Description

Title :  CRYSTAL STRUCTURE OF A LEMA PROTEIN (TM0961) FROM THERMOTOGA MARITIMA MSB8 AT 2.28 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  27 Oct 05  (Deposition) - 15 Nov 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.28
Chains :  Asym./Biol. Unit :  A
Keywords :  Bromodomain-Like Fold, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Membrane Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Lema Protein (Tm0961) From Thermotoga Maritima At 2. 28 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - LEMA PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: TM0961
    Organism Scientific: THERMOTOGA MARITIMA
    Organism Taxid: 243274
    Strain: MSB8

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 14)

Asymmetric/Biological Unit (3, 14)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2MLY12Mod. Amino AcidN-DIMETHYL-LYSINE
3MSE1Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:56 , LEU A:108BINDING SITE FOR RESIDUE CL A 1

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2ETD)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2ETD)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2ETD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2ETD)

(-) Exons   (0, 0)

(no "Exon" information available for 2ETD)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:141
 aligned with Q9X056_THEMA | Q9X056 from UniProtKB/TrEMBL  Length:193

    Alignment length:151
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182 
         Q9X056_THEMA    33 NYLVSLEQEVQEKYSQIQNQLQRRADLIPNLVETVKGYAAHEKEILEEIANARAKLIGAKTPQESAQADAELSSALSRLLAIAENYPNLKADANFRQLMDELAGTENRIAVARRDYNEAVKKYNTAIKKFPGVIFAKMFGFEEKQYFEAKP 183
               SCOP domains --d2etda1 A:35-183 Hypothetical protein TM0961                                                                                                          SCOP domains
               CATH domains 2etdA00 A:-1-183 LemA-like domains                                                                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.----------............ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2etd A  -1 HHLVSLEQEVQEkYSQIQNQLQRRADLIPNLVETVkGYAAHEkEILEEIANARAkLIGAkTPQESAQADAELSSALSRLLAIAENYPNLkADANFRQLmDELAGTENRIAVARRDYNEAVkkYNTAIkk----------GFEEkQYFEAkP 183
                             ||     42  |     52        62     |  72  |     82    |   92       102       112       122       132       142       152||     ||-       172   |   182 
                             0|        45-MLY                 68-MLY 75-MLY      87-MLY|                           122-MLY  131-MSE               153-MLY  ||        172   |     | 
                             35                                                       92-MLY                                                       154-MLY ||            176-MLY | 
                                                                                                                                                         160-MLY               182-MLY
                                                                                                                                                          161-MLY
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 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2ETD)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q9X056_THEMA | Q9X056)
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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