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Title :   SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 379-411) OF HUMAN ZINC FINGER PROTEIN 484

Authors :   T. Tomizawa, N. Tochio, H. Abe, K. Saito, H. Li, M. Sato, S. Koshiba, N. Kobayashi, T. Kigawa, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)

Date :   28 Mar 07 (Deposition) - 02 Oct 07 (Release) - 24 Feb 09 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A  (20x)

Keywords :   Zf-C2H2, Nmr, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   N. Tochio, T. Tomizawa, H. Abe, K. Saito, H. Li, M. Sato, S. Koshiba, N. Kobayashi, T. Kigawa, S. Yokoyama
Solution Structure Of The C2H2 Type Zinc Finger (Region 379-411) Of Human Zinc Finger Protein 484
To Be Published
PubMed: search
(for further references see the PDB file header)

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 1)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 2)

Exons (1, 1)

NMR Structure (1, 1)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1b	ENST00000375495	1b	ENSE00001423546	chr9:95640290-95640172	119	ZN484_HUMAN	-	0	0	-	-
1.2	ENST00000375495	2	ENSE00002185623	chr9:95637341-95637297	45	ZN484_HUMAN	1-5	5	0	-	-
1.4	ENST00000375495	4	ENSE00001785280	chr9:95618600-95618474	127	ZN484_HUMAN	6-48	43	0	-	-
1.5	ENST00000375495	5	ENSE00000869903	chr9:95618185-95618093	93	ZN484_HUMAN	48-79	32	0	-	-
1.6b	ENST00000375495	6b	ENSE00001521895	chr9:95610833-95608351	2483	ZN484_HUMAN	79-852	774	1	A:1-46 (gaps)	169

Sequences/Alignments

NMR Structure

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:46
 aligned with ZN484_HUMAN | Q5JVG2 from UniProtKB/Swiss-Prot  Length:852

    Alignment length:169
                                   305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455         
          ZN484_HUMAN   296 GSQRVYAGICTEYEKDFSLKSNRQKTPYEGNYYKCSDYGRAFIQKSDLFRCQRIHSGEKPYEYSECEKNLPQNSNLNIHKKIHTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPYVCTECGKAFIRKSHFITHERIHTGEKPYECSDCGKSFIKKSQLHVHQRIHTG 464
               SCOP domains -----------------------------------------------------------------------------------d2emfa1 A:8-35              ---------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...--------------------------..------------------------..--------------------------.....ee......ee.hhhhhhhhhhhh.....-----------------------..--.-------------.---------.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------ZINC_FINGER_C2H2_1   -------ZINC_FINGER_C2H2_1   -------ZINC_FINGER_C2H2_1   -- PROSITE
               Transcript 1 Exon 1.6b  PDB: A:1-46 (gaps) UniProt: 79-852 [INCOMPLETE]                                                                                                                Transcript 1
                 2emf A   1 GSS--------------------------GS------------------------SG--------------------------TGGKHFECTECGKAFTRKSTLSMHQKIHTGEKP-----------------------SG--P-------------S---------SG  46
                              |      -         -         4|        -         -     ||  -         -         -   |    14        24        34     |   -         -        41|  |     -       | -       | 
                              3                          4|                        6|                          8                              40                      41| 43            44        45 
                                                          5                         7                                                                                  42

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Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (8, 8)

NMR Structure(hide GO term definitions)

Chain A (ZN484_HUMAN | Q5JVG2)

molecular function
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0003676	nucleic acid binding	Interacting selectively and non-covalently with any nucleic acid.
	GO:0003700	transcription factor activity, sequence-specific DNA binding	Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
biological process
	GO:0006355	regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0006351	transcription, DNA-templated	The cellular synthesis of RNA on a template of DNA.
cellular component
	GO:0005622	intracellular	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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