2EJD - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL ANALYSIS OF DELTA1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE FROM THERMUS THERMOPHILUS WITH BOUND L-ALANINE

Authors :   E. Inagaki, K. Sakamoto, S. Yokoyama, Riken Structural Genomics/Pr Initiative (Rsgi)

Date :   16 Mar 07 (Deposition) - 18 Sep 07 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.85

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: A,B  (3x)

Keywords :   Enzyme-Inhibitor Complex, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   E. Inagaki, N. Ohshima, K. Sakamoto, S. Yokoyama, T. H. Tahirov
Crystal Structure Analysis Of Delta1-Pyrroline-5-Carboxylat Dehydrogenase In Ternary Complex With Inhibitor And Nad
To Be Published
PubMed: search

Molecule 1 - 1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE
	Chains	:	A, B
	EC Number	:	1.5.1.12
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET11A
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	THERMUS THERMOPHILUS
	Organism Taxid	:	300852
	Strain	:	HB8

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (3x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (5, 21)

No.	Name	Count	Type	Full Name
1	ACT	2	Ligand/Ion	ACETATE ION
2	ALA	2	Mod. Amino Acid	ALANINE
3	CSO	2	Mod. Amino Acid	S-HYDROXYCYSTEINE
4	MPD	13	Ligand/Ion	(4S)-2-METHYL-2,4-PENTANEDIOL
5	NA	2	Ligand/Ion	SODIUM ION

Biological Unit 1 (4, 19)

No.	Name	Count	Type	Full Name
1	ACT	2	Ligand/Ion	ACETATE ION
2	ALA	2	Mod. Amino Acid	ALANINE
3	CSO	2	Mod. Amino Acid	S-HYDROXYCYSTEINE
4	MPD	13	Ligand/Ion	(4S)-2-METHYL-2,4-PENTANEDIOL
5	NA	-1	Ligand/Ion	SODIUM ION

Biological Unit 2 (4, 57)

No.	Name	Count	Type	Full Name
1	ACT	6	Ligand/Ion	ACETATE ION
2	ALA	6	Mod. Amino Acid	ALANINE
3	CSO	6	Mod. Amino Acid	S-HYDROXYCYSTEINE
4	MPD	39	Ligand/Ion	(4S)-2-METHYL-2,4-PENTANEDIOL
5	NA	-1	Ligand/Ion	SODIUM ION

Asymmetric Unit (19, 19)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ARG A:462 , PHE A:464 , HIS A:465 , HOH A:2816 , LYS B:510	BINDING SITE FOR RESIDUE ACT A 1520
02	AC2	SOFTWARE	SER A:55 , LEU A:56 , GLU A:123 , ASP A:211 , HOH A:2578	BINDING SITE FOR RESIDUE NA A 1540
03	AC3	SOFTWARE	LYS A:510 , ARG B:462 , PHE B:464 , HIS B:465 , HOH B:2789	BINDING SITE FOR RESIDUE ACT B 2520
04	AC4	SOFTWARE	SER B:55 , LEU B:56 , GLU B:123 , ASP B:211 , HOH B:2788 , HOH B:2923	BINDING SITE FOR RESIDUE NA B 2540
05	AC5	SOFTWARE	PHE A:185 , CSO A:322 , SER A:323 , THR A:476 , GLY A:477 , ALA A:478 , PHE A:485 , HOH A:2536 , HOH A:2586 , HOH A:2812 , HOH A:2993 , HOH A:2994	BINDING SITE FOR RESIDUE ALA A 1517
06	AC6	SOFTWARE	PHE B:185 , CSO B:322 , SER B:323 , THR B:476 , GLY B:477 , ALA B:478 , PHE B:485 , HOH B:2549 , HOH B:2661 , HOH B:2796 , HOH B:2853 , HOH B:2911	BINDING SITE FOR RESIDUE ALA B 2517
07	AC7	SOFTWARE	PHE A:6 , TYR A:144 , ALA A:148 , HOH A:2573 , HOH A:2574 , HOH A:2612 , HOH A:2924 , GLU B:158	BINDING SITE FOR RESIDUE MPD A 1530
08	AC8	SOFTWARE	VAL A:312 , ASP A:359 , HOH A:2576 , HOH A:2934	BINDING SITE FOR RESIDUE MPD A 1531
09	AC9	SOFTWARE	GLU A:241 , GLY A:244 , ALA A:245 , HOH A:2577	BINDING SITE FOR RESIDUE MPD A 1532
10	BC1	SOFTWARE	TYR A:375 , ARG A:412 , HOH A:2927	BINDING SITE FOR RESIDUE MPD A 1533
11	BC2	SOFTWARE	GLN B:279 , HOH B:2571 , HOH B:2887	BINDING SITE FOR RESIDUE MPD B 1534
12	BC3	SOFTWARE	GLN A:279 , HOH A:2793 , PRO B:442	BINDING SITE FOR RESIDUE MPD A 1535
13	BC4	SOFTWARE	GLU A:158 , VAL A:160 , HOH A:2579 , HOH A:2669 , TYR B:144 , ARG B:147 , ALA B:148 , HOH B:2785	BINDING SITE FOR RESIDUE MPD A 2530
14	BC5	SOFTWARE	ARG A:151 , LEU A:500 , HOH A:2983 , MPD B:2532	BINDING SITE FOR RESIDUE MPD A 2531
15	BC6	SOFTWARE	MPD A:2531 , ARG B:151 , HOH B:2918	BINDING SITE FOR RESIDUE MPD B 2532
16	BC7	SOFTWARE	GLU B:241 , ALA B:245 , HOH B:2648 , HOH B:2895	BINDING SITE FOR RESIDUE MPD B 2534
17	BC8	SOFTWARE	ARG A:24 , LEU A:27 , TYR A:122 , GLU A:355 , PRO B:353 , GLU B:355 , GLU B:356 , HOH B:2725	BINDING SITE FOR RESIDUE MPD B 2535
18	BC9	SOFTWARE	VAL B:312 , TYR B:315 , GLY B:316 , ASP B:359 , HOH B:2620	BINDING SITE FOR RESIDUE MPD B 2536
19	CC1	SOFTWARE	ARG B:36 , GLU B:221	BINDING SITE FOR RESIDUE MPD B 2537

(no "SS Bond" information available for 2EJD)

Asymmetric Unit

No.	Residues
1	Tyr A:154	-	Pro A:155
2	Tyr B:154	-	Pro B:155

(no "SAP(SNP)/Variant" information available for 2EJD)

(no "PROSITE Motif" information available for 2EJD)

(no "Exon" information available for 2EJD)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:516
 aligned with Q5SI02_THET8 | Q5SI02 from UniProtKB/TrEMBL  Length:516

    Alignment length:516
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510      
         Q5SI02_THET8     1 MTVEPFRNEPIETFQTEEARRAMREALRRVREEFGRHYPLYIGGEWVDTKERMVSLNPSAPSEVVGTTAKAGKAEAEAALEAAWKAFKTWKDWPQEDRSRLLLKAAALMRRRKRELEATLVYEVGKNWVEASADVAEAIDFIEYYARAALRYRYPAVEVVPYPGEDNESFYVPLGAGVVIAPWNFPVAIFTGMIVGPVAVGNTVIAKPAEDAVVVGAKVFEIFHEAGFPPGVVNFLPGVGEEVGAYLVEHPRIRFINFTGSLEVGLKIYEAAGRLAPGQTWFKRAYVETGGKDAIIVDETADFDLAAEGVVVSAYGFQGQKCSAASRLILTQGAYEPVLERVLKRAERLSVGPAEENPDLGPVVSAEQERKVLSYIEIGKNEGQLVLGGKRLEGEGYFIAPTVFTEVPPKARIAQEEIFGPVLSVIRVKDFAEALEVANDTPYGLTGGVYSRKREHLEWARREFHVGNLYFNRKITGALVGVQPFGGFKLSGTNAKTGALDYLRLFLEMKAVAERF 516
               SCOP domains d2ejda_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains 2ejdA01 A:1-289,A:480-516 Aldehyde Dehydrogenase; Chain A, domain 1                                                                                                                                                                                                                              2ejdA02 A:290-479 Aldehyde Dehydrogenase; Chain A, domain 2                                                                                                                                   2ejdA01 A:1-289,A:480-516             CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...............hhhhhhhhhhhhhhhhhh..eee.eee..eee....eeeeee..eeeeeeeeee..hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.............eeeeeeeee..eeeee......hhhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhhhhhhhh.....eee.....hhhhhhhhh.....eeeee.hhhhhhhhhhhhh..........eeeee....eeeee....hhhhhhhhhhhhhhhhhhh....eeeeeee..hhhhhhhhhhhhhhh....hhhhh.......hhhhhhhhhhhhhhhhh..eeee..............eeee.....hhhhh......eeeeeee.hhhhhhhhhhh.....eeeee..hhhhhhhhhhhh...eeee................hhhhh......hhhhhhh.eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2ejd A   1 MTVEPFRNEPIETFQTEEARRAMREALRRVREEFGRHYPLYIGGEWVDTKERMVSLNPSAPSEVVGTTAKAGKAEAEAALEAAWKAFKTWKDWPQEDRSRLLLKAAALMRRRKRELEATLVYEVGKNWVEASADVAEAIDFIEYYARAALRYRYPAVEVVPYPGEDNESFYVPLGAGVVIAPWNFPVAIFTGMIVGPVAVGNTVIAKPAEDAVVVGAKVFEIFHEAGFPPGVVNFLPGVGEEVGAYLVEHPRIRFINFTGSLEVGLKIYEAAGRLAPGQTWFKRAYVETGGKDAIIVDETADFDLAAEGVVVSAYGFQGQKcSAASRLILTQGAYEPVLERVLKRAERLSVGPAEENPDLGPVVSAEQERKVLSYIEIGKNEGQLVLGGKRLEGEGYFIAPTVFTEVPPKARIAQEEIFGPVLSVIRVKDFAEALEVANDTPYGLTGGVYSRKREHLEWARREFHVGNLYFNRKITGALVGVQPFGGFKLSGTNAKTGALDYLRLFLEMKAVAERF 516
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320 |     330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510      
                                                                                                                                                                                                                                                                                                                                                           322-CSO

Chain B from PDB  Type:PROTEIN  Length:516
 aligned with Q5SI02_THET8 | Q5SI02 from UniProtKB/TrEMBL  Length:516

    Alignment length:516
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510      
         Q5SI02_THET8     1 MTVEPFRNEPIETFQTEEARRAMREALRRVREEFGRHYPLYIGGEWVDTKERMVSLNPSAPSEVVGTTAKAGKAEAEAALEAAWKAFKTWKDWPQEDRSRLLLKAAALMRRRKRELEATLVYEVGKNWVEASADVAEAIDFIEYYARAALRYRYPAVEVVPYPGEDNESFYVPLGAGVVIAPWNFPVAIFTGMIVGPVAVGNTVIAKPAEDAVVVGAKVFEIFHEAGFPPGVVNFLPGVGEEVGAYLVEHPRIRFINFTGSLEVGLKIYEAAGRLAPGQTWFKRAYVETGGKDAIIVDETADFDLAAEGVVVSAYGFQGQKCSAASRLILTQGAYEPVLERVLKRAERLSVGPAEENPDLGPVVSAEQERKVLSYIEIGKNEGQLVLGGKRLEGEGYFIAPTVFTEVPPKARIAQEEIFGPVLSVIRVKDFAEALEVANDTPYGLTGGVYSRKREHLEWARREFHVGNLYFNRKITGALVGVQPFGGFKLSGTNAKTGALDYLRLFLEMKAVAERF 516
               SCOP domains d2ejdb_ B: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains 2ejdB01 B:1-289,B:480-516 Aldehyde Dehydrogenase; Chain A, domain 1                                                                                                                                                                                                                              2ejdB02 B:290-479 Aldehyde Dehydrogenase; Chain A, domain 2                                                                                                                                   2ejdB01 B:1-289,B:480-516             CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...............hhhhhhhhhhhhhhhhhh...ee.eee..eee....eeeeee..eeeeeeeeee..hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.............eeeeeeeee..eeeee......hhhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhhhhhhhh.....eee.....hhhhhhhhh.....eeeee.hhhhhhhhhhhhh..........eeeee....eeeee....hhhhhhhhhhhhhhhhhhh....eeeeeee..hhhhhhhhhhhhhhh....hhhhh.......hhhhhhhhhhhhhhhhhhheeee..............eeee.....hhhhh......eeeeeee.hhhhhhhhhhh.....eeeee..hhhhhhhhhhhh...eeee................hhhhh.......hhhhhh.eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2ejd B   1 MTVEPFRNEPIETFQTEEARRAMREALRRVREEFGRHYPLYIGGEWVDTKERMVSLNPSAPSEVVGTTAKAGKAEAEAALEAAWKAFKTWKDWPQEDRSRLLLKAAALMRRRKRELEATLVYEVGKNWVEASADVAEAIDFIEYYARAALRYRYPAVEVVPYPGEDNESFYVPLGAGVVIAPWNFPVAIFTGMIVGPVAVGNTVIAKPAEDAVVVGAKVFEIFHEAGFPPGVVNFLPGVGEEVGAYLVEHPRIRFINFTGSLEVGLKIYEAAGRLAPGQTWFKRAYVETGGKDAIIVDETADFDLAAEGVVVSAYGFQGQKcSAASRLILTQGAYEPVLERVLKRAERLSVGPAEENPDLGPVVSAEQERKVLSYIEIGKNEGQLVLGGKRLEGEGYFIAPTVFTEVPPKARIAQEEIFGPVLSVIRVKDFAEALEVANDTPYGLTGGVYSRKREHLEWARREFHVGNLYFNRKITGALVGVQPFGGFKLSGTNAKTGALDYLRLFLEMKAVAERF 516
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320 |     330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510      
                                                                                                                                                                                                                                                                                                                                                           322-CSO

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: ALDH-like (168)

Superfamily: ALDH-like (168)

Family: ALDH-like (76)

Protein domain: automated matches (24)

Thermus thermophilus HB8 [TaxId: 300852] (15)

1a	d2ejda_	A:
1b	d2ejdb_	B:

(no "Pfam Domain" information available for 2EJD)

Asymmetric Unit(hide GO term definitions)

Chain A,B (Q5SI02_THET8 | Q5SI02)

molecular function
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0016620	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces NAD or NADP.
biological process
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

Asymmetric Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		ACT	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		ALA	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		CSO	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		MPD	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		NA	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]
		AC7	[ RasMol ]	+environment [ RasMol ]
		AC8	[ RasMol ]	+environment [ RasMol ]
		AC9	[ RasMol ]	+environment [ RasMol ]
		BC1	[ RasMol ]	+environment [ RasMol ]
		BC2	[ RasMol ]	+environment [ RasMol ]
		BC3	[ RasMol ]	+environment [ RasMol ]
		BC4	[ RasMol ]	+environment [ RasMol ]
		BC5	[ RasMol ]	+environment [ RasMol ]
		BC6	[ RasMol ]	+environment [ RasMol ]
		BC7	[ RasMol ]	+environment [ RasMol ]
		BC8	[ RasMol ]	+environment [ RasMol ]
		BC9	[ RasMol ]	+environment [ RasMol ]
		CC1	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Tyr A:154 - Pro A:155	[ RasMol ]
		Tyr B:154 - Pro B:155	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format \| Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	2ejd
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	Q5SI02_THET8 \| Q5SI02
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/TrEMBL

Access by Enzyme Classificator (EC Number)
	1.5.1.12
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	Q5SI02_THET8 \| Q5SI02
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

(no "Related Entries Specified in the PDB File" available for 2EJD)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 21)

Sites (19, 19)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (2, 4)

Pfam Domains (0, 0)

Gene Ontology (5, 5)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File