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(-) Description

Title :  STAGE V SPOROLATION PROTEIN S (SPOVS) FROM THERMUS THERMOPHILUS
 
Authors :  P. H. Rehse, S. Yokoyama, Riken Structural Genomics/Proteomics In (Rsgi)
Date :  02 Mar 07  (Deposition) - 04 Sep 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.25
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  A (1x),B (1x)
Keywords :  Sporulation, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Cell Cycle (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. H. Rehse, S. Yokoyama
Stage V Sporolation Protein S (Spovs) From Thermus Thermophilus
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - STAGE V SPORULATION PROTEIN S (SPOVS) RELATED PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-11A
    Expression System Strain: B834 (DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Mutation: YES
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 300852
    Strain: HB8

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B
Biological Unit 3 (1x): A (1x)B (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 11)

Asymmetric Unit (3, 11)
No.NameCountTypeFull Name
1ACT6Ligand/IonACETATE ION
2MSE3Mod. Amino AcidSELENOMETHIONINE
3ZN2Ligand/IonZINC ION
Biological Unit 1 (2, 3)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2MSE1Mod. Amino AcidSELENOMETHIONINE
3ZN-1Ligand/IonZINC ION
Biological Unit 2 (2, 6)
No.NameCountTypeFull Name
1ACT4Ligand/IonACETATE ION
2MSE2Mod. Amino AcidSELENOMETHIONINE
3ZN-1Ligand/IonZINC ION
Biological Unit 3 (2, 3)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2MSE1Mod. Amino AcidSELENOMETHIONINE
3ZN-1Ligand/IonZINC ION

(-) Sites  (0, 0)

(no "Site" information available for 2EH1)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2EH1)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2EH1)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2EH1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2EH1)

(-) Exons   (0, 0)

(no "Exon" information available for 2EH1)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:88
 aligned with Q5SK02_THET8 | Q5SK02 from UniProtKB/TrEMBL  Length:90

    Alignment length:88
                                    11        21        31        41        51        61        71        81        
          Q5SK02_THET8    2 ETLRVSSKSRPNSVAGAIAALLRTKGEVEVQAIGPQAVNQAVKAIAIARGYIAPDNLDLVVKPAFVKLELENEERTALKFSIKAHPLE 89
               SCOP domains ---------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee....hhhhhhhhhhhhhhhh.eeeeee.hhhhhhhhhhhhhhhhhhhh...eeeeeeeeeeeeee..eeeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------- Transcript
                  2eh1 A  2 ETLRVSSKSRPNSVAGAIAAmLRTKGEVEVQAIGPQAVNQAVKAIAIARGYIAPDNLDLVVKPAFVKLELENEERTALKFSIKAHPLE 89
                                    11        21|       31        41        51        61        71        81        
                                               22-MSE                                                               


Chain B from PDB  Type:PROTEIN  Length:89
 aligned with Q5SK02_THET8 | Q5SK02 from UniProtKB/TrEMBL  Length:90

    Alignment length:89
                                    10        20        30        40        50        60        70        80         
          Q5SK02_THET8    1 METLRVSSKSRPNSVAGAIAALLRTKGEVEVQAIGPQAVNQAVKAIAIARGYIAPDNLDLVVKPAFVKLELENEERTALKFSIKAHPLE 89
               SCOP domains ----------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee....hhhhhhhhhhhhhhhh.eeeeee.hhhhhhhhhhhhhhhhhhhh...eeeeeeeeeee........eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------- Transcript
                  2eh1 B  1 mETLRVSSKSRPNSVAGAIAAmLRTKGEVEVQAIGPQAVNQAVKAIAIARGYIAPDNLDLVVKPAFVKLELENEERTALKFSIKAHPLE 89
                            |       10        20 |      30        40        50        60        70        80         
                            1-MSE               22-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2EH1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2EH1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2EH1)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (Q5SK02_THET8 | Q5SK02)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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 Related Entries

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UniProtKB/TrEMBL
        Q5SK02_THET8 | Q5SK02: 2ek0

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